Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C6669_RS09445 Genome accession   NZ_CP031134
Coordinates   1800062..1800532 (-) Length   156 a.a.
NCBI ID   WP_001275770.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN064035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1795062..1805532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6669_RS09415 (C6669_09415) nlpA 1795575..1796393 (+) 819 WP_000779426.1 lipoprotein NlpA -
  C6669_RS09420 (C6669_09420) yicL 1796397..1797320 (-) 924 WP_000535971.1 carboxylate/amino acid/amine transporter -
  C6669_RS09425 (C6669_09425) setC 1797431..1798615 (-) 1185 WP_001172876.1 sugar efflux transporter -
  C6669_RS29750 (C6669_09430) rhuM 1799012..1799173 (-) 162 Protein_1691 RhuM family protein -
  C6669_RS09435 (C6669_09435) - 1799382..1799702 (-) 321 WP_000856973.1 TA system toxin CbtA family protein -
  C6669_RS09440 (C6669_09440) - 1799723..1800049 (-) 327 WP_000052843.1 type IV toxin-antitoxin system YeeU family antitoxin -
  C6669_RS09445 (C6669_09445) radC 1800062..1800532 (-) 471 WP_001275770.1 RadC family protein Machinery gene
  C6669_RS09450 (C6669_09450) - 1800601..1801353 (-) 753 Protein_1695 DUF932 domain-containing protein -
  C6669_RS30170 (C6669_09460) - 1802609..1802683 (-) 75 Protein_1697 hypothetical protein -
  C6669_RS09465 (C6669_09465) - 1802776..1803786 (-) 1011 WP_001348677.1 hypothetical protein -
  C6669_RS09470 (C6669_09470) - 1803848..1804537 (-) 690 WP_000115588.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17782.56 Da        Isoelectric Point: 7.2359

>NTDB_id=262364 C6669_RS09445 WP_001275770.1 1800062..1800532(-) (radC) [Escherichia coli strain CFSAN064035]
MSAPNLFPEFPVNEQRVIQRALRLLEKYQRQPSESFTSTSVTKAWLQLRMAHLEREAFIVMYLDNQHCLLEREILFIGTL
SHTEVHPREVVKSALKHNAAAVILAHNHPSGTTEISQQDKHMTQRIVKALALVEVRVLDHLVVGNETISFAELGLL

Nucleotide


Download         Length: 471 bp        

>NTDB_id=262364 C6669_RS09445 WP_001275770.1 1800062..1800532(-) (radC) [Escherichia coli strain CFSAN064035]
ATGTCTGCGCCCAATTTATTCCCGGAATTTCCTGTAAACGAGCAACGTGTTATACAACGCGCACTGCGATTGCTAGAGAA
GTATCAGCGTCAACCCAGTGAATCATTTACTAGCACCAGCGTTACTAAAGCCTGGCTTCAACTCAGGATGGCACACCTTG
AGCGTGAAGCTTTCATCGTGATGTATCTCGACAATCAGCACTGTTTGCTGGAACGCGAAATACTGTTTATCGGCACACTG
AGCCATACCGAAGTACATCCCCGCGAAGTGGTGAAATCTGCACTGAAGCATAATGCTGCTGCGGTAATTCTGGCGCACAA
CCATCCCTCTGGTACGACAGAAATCAGCCAGCAAGATAAACACATGACTCAGCGGATCGTGAAAGCGCTGGCGCTGGTGG
AAGTGCGCGTGCTGGATCATCTCGTAGTCGGGAATGAGACAATTTCATTTGCTGAGCTGGGATTACTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.913

73.718

0.397

Multiple sequence alignment