Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CYD95_RS04285 | Genome accession | NZ_CP025471 |
| Coordinates | 895242..895667 (+) | Length | 141 a.a. |
| NCBI ID | WP_004165764.1 | Uniprot ID | E0NDA2 |
| Organism | Pediococcus acidilactici strain PB22 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 884390..926225 | 895242..895667 | within | 0 |
Gene organization within MGE regions
Location: 884390..926225
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYD95_RS04190 (CYD95_04200) | - | 884390..885565 (-) | 1176 | WP_004165738.1 | tyrosine-type recombinase/integrase | - |
| CYD95_RS04195 (CYD95_04205) | - | 885679..885867 (-) | 189 | WP_004165739.1 | hypothetical protein | - |
| CYD95_RS04200 (CYD95_04210) | - | 885955..886752 (-) | 798 | WP_036671193.1 | DUF1828 domain-containing protein | - |
| CYD95_RS04205 (CYD95_04215) | - | 886769..887206 (-) | 438 | WP_004165741.1 | DUF6978 family protein | - |
| CYD95_RS04210 (CYD95_04220) | - | 887292..888308 (-) | 1017 | WP_004165742.1 | hypothetical protein | - |
| CYD95_RS04215 (CYD95_04225) | - | 888344..888751 (-) | 408 | WP_126130474.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CYD95_RS04220 (CYD95_04230) | - | 888763..889134 (-) | 372 | WP_004165746.1 | helix-turn-helix domain-containing protein | - |
| CYD95_RS04225 (CYD95_04235) | - | 889295..889537 (+) | 243 | WP_004165747.1 | helix-turn-helix transcriptional regulator | - |
| CYD95_RS04230 (CYD95_04240) | - | 889534..889863 (+) | 330 | WP_004165748.1 | hypothetical protein | - |
| CYD95_RS04235 (CYD95_04245) | - | 890080..890295 (+) | 216 | WP_004165750.1 | hypothetical protein | - |
| CYD95_RS04240 (CYD95_04250) | - | 890381..890845 (+) | 465 | WP_126130475.1 | helix-turn-helix domain-containing protein | - |
| CYD95_RS04245 (CYD95_04255) | - | 890846..891127 (+) | 282 | WP_004165753.1 | hypothetical protein | - |
| CYD95_RS09670 | - | 891253..891378 (+) | 126 | WP_262347917.1 | hypothetical protein | - |
| CYD95_RS04250 (CYD95_04260) | - | 891365..891610 (+) | 246 | WP_004165755.1 | hypothetical protein | - |
| CYD95_RS04255 (CYD95_04265) | bet | 891603..892394 (+) | 792 | WP_004165756.1 | phage recombination protein Bet | - |
| CYD95_RS04260 (CYD95_04270) | - | 892303..893184 (+) | 882 | WP_004165757.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| CYD95_RS04265 (CYD95_04275) | - | 893194..894063 (+) | 870 | WP_126130476.1 | helix-turn-helix domain-containing protein | - |
| CYD95_RS04270 (CYD95_04280) | - | 894068..894757 (+) | 690 | WP_004165760.1 | putative HNHc nuclease | - |
| CYD95_RS04275 (CYD95_04285) | - | 894801..895028 (+) | 228 | WP_004165761.1 | helix-turn-helix domain-containing protein | - |
| CYD95_RS04280 (CYD95_04290) | - | 895043..895249 (+) | 207 | WP_004165763.1 | hypothetical protein | - |
| CYD95_RS04285 (CYD95_04295) | ssb | 895242..895667 (+) | 426 | WP_004165764.1 | single-stranded DNA-binding protein | Machinery gene |
| CYD95_RS04290 (CYD95_04300) | - | 895679..895984 (+) | 306 | WP_004165765.1 | HTH domain-containing protein | - |
| CYD95_RS04295 (CYD95_04310) | - | 896328..896738 (+) | 411 | WP_004165767.1 | hypothetical protein | - |
| CYD95_RS04300 (CYD95_04315) | - | 896943..897230 (+) | 288 | WP_036671208.1 | hypothetical protein | - |
| CYD95_RS04310 (CYD95_04325) | - | 897885..898742 (+) | 858 | WP_126130477.1 | macro domain-containing protein | - |
| CYD95_RS04315 (CYD95_04330) | - | 898726..899202 (+) | 477 | WP_004165770.1 | TIR domain-containing protein | - |
| CYD95_RS04320 (CYD95_04335) | - | 899276..899470 (+) | 195 | WP_004165771.1 | hypothetical protein | - |
| CYD95_RS04325 (CYD95_04340) | - | 899702..900409 (+) | 708 | WP_004165772.1 | terminase gpP N-terminus-related DNA-binding protein | - |
| CYD95_RS04330 (CYD95_04345) | - | 900406..901704 (+) | 1299 | WP_004165774.1 | PBSX family phage terminase large subunit | - |
| CYD95_RS04335 (CYD95_04350) | - | 901716..903245 (+) | 1530 | WP_004165775.1 | phage portal protein | - |
| CYD95_RS04340 (CYD95_04355) | - | 903242..904291 (+) | 1050 | WP_004165776.1 | gp4 family protein | - |
| CYD95_RS04345 (CYD95_04360) | - | 904415..904993 (+) | 579 | WP_004165777.1 | phage scaffolding protein | - |
| CYD95_RS04350 (CYD95_04365) | - | 905007..905960 (+) | 954 | WP_004165778.1 | phage major capsid protein | - |
| CYD95_RS04355 (CYD95_04370) | - | 906022..906423 (+) | 402 | WP_036671210.1 | hypothetical protein | - |
| CYD95_RS04360 (CYD95_04375) | - | 906416..906793 (+) | 378 | WP_004165780.1 | putative minor capsid protein | - |
| CYD95_RS04365 (CYD95_04380) | - | 906790..907170 (+) | 381 | WP_004165781.1 | minor capsid protein | - |
| CYD95_RS04370 (CYD95_04385) | - | 907163..907579 (+) | 417 | WP_004165782.1 | hypothetical protein | - |
| CYD95_RS04375 (CYD95_04390) | - | 907595..908182 (+) | 588 | WP_004165783.1 | phage tail tube protein | - |
| CYD95_RS04380 (CYD95_04395) | - | 908256..908513 (+) | 258 | WP_126130478.1 | phosphoenolpyruvate synthase | - |
| CYD95_RS04385 (CYD95_04400) | - | 908583..909137 (+) | 555 | WP_004165786.1 | hypothetical protein | - |
| CYD95_RS04390 (CYD95_04405) | - | 909140..909760 (+) | 621 | WP_004165787.1 | Gp15 family bacteriophage protein | - |
| CYD95_RS04395 (CYD95_04410) | - | 909764..915421 (+) | 5658 | WP_004165788.1 | phage tail tape measure protein | - |
| CYD95_RS04400 (CYD95_04415) | - | 915418..916242 (+) | 825 | WP_004165789.1 | phage tail family protein | - |
| CYD95_RS04405 (CYD95_04420) | - | 916255..917358 (+) | 1104 | WP_004165790.1 | phage tail protein | - |
| CYD95_RS04410 (CYD95_04425) | - | 917369..917860 (+) | 492 | WP_036671212.1 | phage tail protein | - |
| CYD95_RS04415 (CYD95_04430) | - | 917853..918164 (+) | 312 | WP_036671214.1 | hypothetical protein | - |
| CYD95_RS04420 (CYD95_04435) | - | 918157..918426 (+) | 270 | WP_004165794.1 | hypothetical protein | - |
| CYD95_RS04425 (CYD95_04440) | - | 918430..920262 (+) | 1833 | WP_126130479.1 | metallophosphoesterase | - |
| CYD95_RS04430 (CYD95_04445) | - | 920288..921037 (+) | 750 | WP_143121385.1 | hypothetical protein | - |
| CYD95_RS04435 (CYD95_04450) | - | 921048..921371 (+) | 324 | WP_036671216.1 | hypothetical protein | - |
| CYD95_RS04440 (CYD95_04455) | - | 921364..921489 (+) | 126 | WP_004165798.1 | XkdX family protein | - |
| CYD95_RS04445 (CYD95_04460) | - | 921570..922217 (+) | 648 | WP_004165799.1 | hypothetical protein | - |
| CYD95_RS04450 (CYD95_04465) | - | 922286..922531 (+) | 246 | WP_126130481.1 | hypothetical protein | - |
| CYD95_RS04455 (CYD95_04470) | - | 922531..922782 (+) | 252 | WP_004165801.1 | phage holin | - |
| CYD95_RS04460 (CYD95_04475) | - | 922763..924142 (+) | 1380 | WP_126130482.1 | GH25 family lysozyme | - |
| CYD95_RS04465 (CYD95_04480) | - | 924267..925112 (+) | 846 | WP_004165803.1 | hypothetical protein | - |
| CYD95_RS04470 (CYD95_04485) | - | 925536..926225 (-) | 690 | WP_004165804.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15729.44 Da Isoelectric Point: 5.1871
>NTDB_id=261808 CYD95_RS04285 WP_004165764.1 895242..895667(+) (ssb) [Pediococcus acidilactici strain PB22]
MINRAVLVGRLTRDPELKYTTNGAAVASFNLAVNRQFTNSQGEREADFINCVMWRKAAEIFCNYTHKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVTENFSLLDSKPKEHQQNNAGQVSTPGDPFANGGQSIDITDEDLPF
MINRAVLVGRLTRDPELKYTTNGAAVASFNLAVNRQFTNSQGEREADFINCVMWRKAAEIFCNYTHKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVTENFSLLDSKPKEHQQNNAGQVSTPGDPFANGGQSIDITDEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=261808 CYD95_RS04285 WP_004165764.1 895242..895667(+) (ssb) [Pediococcus acidilactici strain PB22]
GTGATTAATCGAGCAGTACTAGTCGGGCGATTAACGAGAGACCCCGAACTAAAGTACACAACCAATGGCGCAGCGGTCGC
TAGCTTTAACCTAGCAGTCAATCGCCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGCGTAATGT
GGCGAAAGGCGGCAGAAATTTTCTGCAACTATACTCACAAAGGTTCGTTGGTTGGCATTGATGGCCGGATTCAAACCCGT
TCATACGAAAACCAACAAGGACAACGAGTGTATGTTACCGAAGTTGTTACAGAAAACTTCTCGTTGCTGGATTCAAAGCC
GAAAGAACATCAGCAAAATAACGCAGGGCAAGTATCAACGCCAGGAGATCCGTTCGCTAATGGCGGACAGTCAATTGATA
TCACCGATGAAGATTTACCGTTCTAG
GTGATTAATCGAGCAGTACTAGTCGGGCGATTAACGAGAGACCCCGAACTAAAGTACACAACCAATGGCGCAGCGGTCGC
TAGCTTTAACCTAGCAGTCAATCGCCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGCGTAATGT
GGCGAAAGGCGGCAGAAATTTTCTGCAACTATACTCACAAAGGTTCGTTGGTTGGCATTGATGGCCGGATTCAAACCCGT
TCATACGAAAACCAACAAGGACAACGAGTGTATGTTACCGAAGTTGTTACAGAAAACTTCTCGTTGCTGGATTCAAAGCC
GAAAGAACATCAGCAAAATAACGCAGGGCAAGTATCAACGCCAGGAGATCCGTTCGCTAATGGCGGACAGTCAATTGATA
TCACCGATGAAGATTTACCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.412 |
100 |
0.716 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.179 |
100 |
0.652 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.633 |
77.305 |
0.461 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.958 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.958 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.254 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.254 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.254 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.254 |
100 |
0.426 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
36.879 |
100 |
0.369 |