Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   DSQ35_RS07495 Genome accession   NZ_CP030866
Coordinates   1448211..1448798 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   Q0P8E5
Organism   Campylobacter jejuni strain CS17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443211..1453798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSQ35_RS07470 (DSQ35_1482) - 1444000..1444200 (-) 201 WP_002826948.1 hypothetical protein -
  DSQ35_RS07475 (DSQ35_1484) - 1444350..1445024 (+) 675 WP_253697180.1 S24 family peptidase -
  DSQ35_RS07480 (DSQ35_1485) - 1445024..1445725 (+) 702 WP_002826961.1 hypothetical protein -
  DSQ35_RS07485 (DSQ35_1486) - 1445802..1446665 (-) 864 Protein_1460 type II secretion system F family protein -
  DSQ35_RS07490 (DSQ35_1487) ctsE 1446662..1448221 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  DSQ35_RS07495 (DSQ35_1488) ctsX 1448211..1448798 (-) 588 WP_002851370.1 membrane protein Machinery gene
  DSQ35_RS07500 (DSQ35_1489) ctsP 1448802..1449410 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  DSQ35_RS07505 (DSQ35_1490) ctsD 1449403..1450815 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DSQ35_RS07510 (DSQ35_1491) ctsR 1450793..1451104 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=261187 DSQ35_RS07495 WP_002851370.1 1448211..1448798(-) (ctsX) [Campylobacter jejuni strain CS17]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=261187 DSQ35_RS07495 WP_002851370.1 1448211..1448798(-) (ctsX) [Campylobacter jejuni strain CS17]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1