Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   SPSF3K_RS09600 Genome accession   NZ_CP025420
Coordinates   1901963..1903267 (-) Length   434 a.a.
NCBI ID   WP_004234978.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1896963..1908267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS09585 (SPSF3K_01945) - 1899630..1900589 (+) 960 WP_071349337.1 IS30-like element IS1062 family transposase -
  SPSF3K_RS09590 (SPSF3K_01946) hpf 1900679..1901227 (-) 549 WP_003105371.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SPSF3K_RS09595 (SPSF3K_01947) - 1901302..1901904 (-) 603 WP_231070368.1 ComF family protein -
  SPSF3K_RS09600 (SPSF3K_01948) comFA/cflA 1901963..1903267 (-) 1305 WP_004234978.1 DEAD/DEAH box helicase Machinery gene
  SPSF3K_RS09605 (SPSF3K_01949) - 1903324..1903956 (+) 633 WP_004234979.1 YigZ family protein -
  SPSF3K_RS09610 (SPSF3K_01950) cysK 1904079..1905008 (+) 930 WP_003103108.1 cysteine synthase A -
  SPSF3K_RS09615 (SPSF3K_01951) - 1905084..1905437 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  SPSF3K_RS09620 (SPSF3K_01952) - 1905437..1906837 (-) 1401 WP_003104279.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SPSF3K_RS09625 (SPSF3K_01953) - 1906871..1907512 (-) 642 WP_003107492.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 49521.42 Da        Isoelectric Point: 9.6275

>NTDB_id=261186 SPSF3K_RS09600 WP_004234978.1 1901963..1903267(-) (comFA/cflA) [Streptococcus parauberis strain SPOF3K]
MGKNYYEQGRLFTEQQMKNVITARTFSMKGSMSMESGKQCCNRCFQEVAKTNLLPNGKTYCRFCIAFGRVESESQLYYFA
PQAFPKGDYLSWNGQLTPYQEKISEFLLGNYLNKKNSLVHAVTGAGKTEMIYKLIESVINQGGWVCFTSPRVDVCIDIKN
RLVRDFSCPITIMYGGSEEYRPAPLIVSTTHQLLKFYRAFDLLIIDEVDAFPFLGNVVLNKATQSCLKEEGKVVCLTATS
TNELEQKVSDGHYEKIRLSRRFHNQPLVVPKFQLIYPLSKQFEKNKFPNLLSNLISQQRQTAFPLLIFYPLITEGEKFTK
ILQKASPKEKIAFVSSKSDDRKEKIDAFKKRQIDILVTTTILERGVTFPEVDVYVILANHKLFTSSSLIQIAGRVGRSVS
RPSGQLLFIHEGVSLQMKKARKQIIEMNKEAYGE

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=261186 SPSF3K_RS09600 WP_004234978.1 1901963..1903267(-) (comFA/cflA) [Streptococcus parauberis strain SPOF3K]
ATGGGAAAAAATTATTATGAACAAGGTCGACTTTTTACTGAACAACAAATGAAAAATGTGATAACTGCGAGAACTTTTTC
CATGAAAGGAAGTATGAGTATGGAGTCTGGTAAGCAATGTTGCAATAGATGTTTTCAAGAAGTTGCTAAAACTAATCTTT
TACCTAATGGGAAGACATATTGTAGATTTTGTATTGCCTTTGGTAGGGTGGAATCTGAATCACAACTCTATTATTTTGCA
CCTCAAGCATTTCCAAAAGGTGATTATTTAAGCTGGAATGGTCAACTAACCCCATATCAAGAAAAAATTTCAGAATTTTT
GTTAGGCAATTATCTTAATAAAAAAAACAGCTTAGTCCATGCTGTGACAGGTGCTGGAAAAACAGAAATGATATATAAAT
TAATTGAATCAGTAATCAATCAAGGTGGCTGGGTCTGTTTTACTAGTCCCCGAGTAGATGTCTGTATTGATATCAAAAAT
CGTTTAGTTCGAGACTTCTCTTGCCCAATAACAATTATGTATGGAGGGTCCGAGGAATATCGTCCAGCCCCCTTGATAGT
TTCAACAACACATCAACTCTTAAAATTTTATCGAGCCTTTGATTTATTAATAATAGATGAAGTTGATGCTTTTCCTTTTT
TAGGGAATGTGGTTCTAAATAAAGCAACACAATCATGTTTAAAAGAGGAAGGTAAAGTTGTTTGTCTGACTGCAACTTCG
ACAAATGAATTAGAACAAAAAGTCAGCGATGGACATTATGAAAAAATAAGATTGTCAAGACGTTTCCATAATCAACCATT
GGTCGTTCCTAAGTTTCAATTAATTTATCCATTATCAAAACAGTTTGAAAAAAATAAATTTCCTAACTTACTAAGTAATT
TGATTAGTCAACAAAGACAGACTGCATTCCCTTTACTAATTTTCTACCCTCTAATTACAGAAGGGGAAAAATTTACGAAA
ATATTGCAAAAAGCTTCTCCTAAAGAAAAAATTGCCTTTGTATCAAGTAAATCTGATGATCGAAAAGAGAAAATTGATGC
GTTTAAAAAAAGACAAATTGATATTCTTGTAACTACGACTATTTTGGAGAGGGGAGTAACATTTCCAGAAGTAGATGTTT
ACGTTATTTTGGCAAATCATAAGCTATTTACGAGTAGTAGCCTGATTCAGATAGCAGGTCGCGTAGGGAGATCCGTATCT
CGACCAAGTGGGCAGTTACTATTTATTCATGAAGGGGTAAGTCTACAAATGAAGAAAGCTCGTAAACAAATTATAGAAAT
GAATAAGGAAGCATATGGTGAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(289-397)

Type III restriction enzyme, res subunit (ResIII)

(95-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae D39

52.83

97.696

0.516
  comFA/cflA Streptococcus pneumoniae R6

52.83

97.696

0.516
  comFA/cflA Streptococcus pneumoniae TIGR4

52.83

97.696

0.516
  comFA/cflA Streptococcus pneumoniae Rx1

52.83

97.696

0.516
  comFA/cflA Streptococcus mitis SK321

52.123

97.696

0.509
  comFA/cflA Streptococcus mitis NCTC 12261

51.415

97.696

0.502
  comFA Lactococcus lactis subsp. cremoris KW2

48.01

92.627

0.445
  comFA Bacillus subtilis subsp. subtilis str. 168

36.49

99.77

0.364

Multiple sequence alignment