Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   CRH08_RS00815 Genome accession   NZ_CP025419
Coordinates   125339..125632 (+) Length   97 a.a.
NCBI ID   WP_024390433.1    Uniprot ID   -
Organism   Streptococcus suis strain SH0104     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120339..130632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH08_RS00785 - 121361..121726 (+) 366 WP_002936568.1 DUF1033 family protein -
  CRH08_RS00790 - 121761..122711 (-) 951 WP_002936565.1 S66 peptidase family protein -
  CRH08_RS00795 comYA 122797..123747 (+) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  CRH08_RS00800 comYB 123659..124696 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  CRH08_RS00805 comYC 124698..124979 (+) 282 WP_009909092.1 competence type IV pilus major pilin ComGC Machinery gene
  CRH08_RS00810 comGD 124960..125367 (+) 408 WP_009909093.1 competence type IV pilus minor pilin ComGD -
  CRH08_RS00815 comYE 125339..125632 (+) 294 WP_024390433.1 competence type IV pilus minor pilin ComGE Machinery gene
  CRH08_RS00820 comGF/cglF 125619..126053 (+) 435 WP_009909097.1 competence type IV pilus minor pilin ComGF Machinery gene
  CRH08_RS00825 comGG 126031..126441 (+) 411 WP_009909099.1 competence type IV pilus minor pilin ComGG -
  CRH08_RS00830 comYH 126498..127451 (+) 954 WP_024409299.1 class I SAM-dependent methyltransferase Machinery gene
  CRH08_RS00835 - 127501..128688 (+) 1188 WP_013730078.1 acetate kinase -
  CRH08_RS00845 - 129003..129599 (+) 597 WP_009909104.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10767.72 Da        Isoelectric Point: 9.6566

>NTDB_id=261098 CRH08_RS00815 WP_024390433.1 125339..125632(+) (comYE) [Streptococcus suis strain SH0104]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDVGRRRQAWELEQQEVLNLAQMAVQTGQDKLALNGVTVQVQQTAD
KIIVFYEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=261098 CRH08_RS00815 WP_024390433.1 125339..125632(+) (comYE) [Streptococcus suis strain SH0104]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCAACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGTAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAAGCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACAAACAGCGGAT
AAGATCATTGTTTTCTACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

43.158

97.938

0.423
  comGE/cglE Streptococcus pneumoniae D39

43.158

97.938

0.423
  comGE/cglE Streptococcus pneumoniae R6

43.158

97.938

0.423
  comGE/cglE Streptococcus pneumoniae TIGR4

43.158

97.938

0.423
  comGE/cglE Streptococcus mitis SK321

42.105

97.938

0.412
  comGE/cglE Streptococcus mitis NCTC 12261

42.105

97.938

0.412
  comGE Lactococcus lactis subsp. cremoris KW2

38.043

94.845

0.361

Multiple sequence alignment