Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SAO46_RS02000 | Genome accession | NZ_CP025395 |
| Coordinates | 418199..418702 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus O46 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 418199..464324 | 418199..418702 | within | 0 |
Gene organization within MGE regions
Location: 418199..464324
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAO46_RS02000 (SAO46_00366) | ssbA | 418199..418702 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| SAO46_RS02005 (SAO46_00367) | rpsR | 418754..418996 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| SAO46_RS02010 (SAO46_00368) | - | 419237..420466 (-) | 1230 | WP_000270123.1 | site-specific integrase | - |
| SAO46_RS02015 (SAO46_00369) | - | 420923..421618 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| SAO46_RS02020 (SAO46_00370) | - | 421762..421974 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| SAO46_RS02025 (SAO46_00371) | - | 421975..422247 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| SAO46_RS02030 (SAO46_00372) | - | 422259..422405 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| SAO46_RS02035 (SAO46_00373) | - | 422398..422607 (+) | 210 | WP_001058493.1 | hypothetical protein | - |
| SAO46_RS02040 (SAO46_00374) | - | 422610..422936 (+) | 327 | WP_001103963.1 | DUF1474 family protein | - |
| SAO46_RS02045 (SAO46_00375) | - | 423001..423870 (+) | 870 | WP_001002726.1 | primase alpha helix C-terminal domain-containing protein | - |
| SAO46_RS02050 (SAO46_00376) | - | 423884..425593 (+) | 1710 | WP_000447457.1 | DUF927 domain-containing protein | - |
| SAO46_RS02055 (SAO46_00377) | - | 425905..426285 (+) | 381 | WP_000356937.1 | hypothetical protein | - |
| SAO46_RS02060 (SAO46_00378) | - | 426282..426923 (+) | 642 | WP_001019787.1 | hypothetical protein | - |
| SAO46_RS02065 (SAO46_00379) | - | 427270..427611 (+) | 342 | WP_001190600.1 | hypothetical protein | - |
| SAO46_RS02070 (SAO46_00380) | - | 427623..428201 (+) | 579 | WP_000846276.1 | hypothetical protein | - |
| SAO46_RS02075 (SAO46_00381) | - | 428219..428437 (+) | 219 | WP_000853271.1 | capsid morphogenesis B protein | - |
| SAO46_RS02080 (SAO46_00382) | - | 428488..429015 (+) | 528 | WP_000765272.1 | spore coat protein | - |
| SAO46_RS02085 | - | 429147..429359 (+) | 213 | WP_078064908.1 | pathogenicity island family protein | - |
| SAO46_RS02090 (SAO46_00384) | - | 429356..429925 (+) | 570 | WP_001293094.1 | terminase small subunit | - |
| SAO46_RS02095 (SAO46_00385) | - | 430032..430382 (+) | 351 | WP_000768417.1 | complement inhibitor SCIN family protein | - |
| SAO46_RS02100 (SAO46_00386) | vwb | 430641..432140 (+) | 1500 | WP_000731022.1 | von Willebrand factor binding protein Vwb | - |
| SAO46_RS14425 | - | 432452..432733 (+) | 282 | WP_025174648.1 | hypothetical protein | - |
| SAO46_RS02110 (SAO46_00388) | - | 432852..433364 (+) | 513 | WP_000813314.1 | hypothetical protein | - |
| SAO46_RS14430 | - | 433380..433559 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| SAO46_RS02125 (SAO46_00389) | - | 434027..434752 (+) | 726 | WP_000166620.1 | CPBP family intramembrane glutamic endopeptidase | - |
| SAO46_RS02130 (SAO46_00390) | - | 435392..436399 (-) | 1008 | WP_001080631.1 | Abi family protein | - |
| SAO46_RS02135 | - | 436405..437117 (-) | 713 | Protein_404 | tyrosine-type recombinase/integrase | - |
| SAO46_RS02140 (SAO46_00392) | selX | 437317..437928 (+) | 612 | WP_000475322.1 | staphylococcal enterotoxin-like toxin X | - |
| SAO46_RS02145 (SAO46_00394) | - | 438297..438665 (+) | 369 | WP_000849165.1 | YxeA family protein | - |
| SAO46_RS02150 (SAO46_00395) | - | 438846..439418 (+) | 573 | Protein_407 | PepSY domain-containing protein | - |
| SAO46_RS02155 (SAO46_00396) | - | 439556..439819 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| SAO46_RS02160 (SAO46_00397) | - | 440113..440367 (+) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| SAO46_RS02165 | - | 440406..440615 (-) | 210 | WP_031901230.1 | hypothetical protein | - |
| SAO46_RS02170 (SAO46_00398) | - | 440793..441374 (+) | 582 | WP_000158372.1 | histidine phosphatase family protein | - |
| SAO46_RS02175 | - | 441440..441823 (-) | 384 | Protein_412 | hypothetical protein | - |
| SAO46_RS02180 (SAO46_00400) | - | 442092..442718 (-) | 627 | WP_000746682.1 | NDxxF motif lipoprotein | - |
| SAO46_RS02185 | - | 442790..443033 (-) | 244 | Protein_414 | hypothetical protein | - |
| SAO46_RS02190 (SAO46_00402) | ahpF | 443163..444686 (-) | 1524 | WP_000930494.1 | alkyl hydroperoxide reductase subunit F | - |
| SAO46_RS02195 (SAO46_00403) | ahpC | 444702..445271 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| SAO46_RS02200 (SAO46_00404) | nfsA | 445763..446518 (+) | 756 | WP_001279728.1 | oxygen-insensitive NADPH nitroreductase | - |
| SAO46_RS02205 (SAO46_00405) | - | 446598..447986 (-) | 1389 | WP_000990998.1 | L-cystine transporter | - |
| SAO46_RS02210 | - | 448071..448172 (+) | 102 | WP_031901229.1 | hypothetical protein | - |
| SAO46_RS02220 (SAO46_00406) | - | 448962..449918 (-) | 957 | WP_000956148.1 | hypothetical protein | - |
| SAO46_RS02225 (SAO46_00407) | - | 450036..450698 (-) | 663 | WP_000394705.1 | hypothetical protein | - |
| SAO46_RS02230 (SAO46_00408) | - | 450841..451248 (-) | 408 | WP_000763770.1 | general stress protein | - |
| SAO46_RS02235 (SAO46_00409) | xpt | 451761..452339 (+) | 579 | WP_000421405.1 | xanthine phosphoribosyltransferase | - |
| SAO46_RS02240 (SAO46_00410) | pbuX | 452339..453607 (+) | 1269 | WP_000793022.1 | xanthine permease PbuX | - |
| SAO46_RS02245 (SAO46_00411) | guaB | 453645..455111 (+) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| SAO46_RS02250 (SAO46_00412) | guaA | 455136..456677 (+) | 1542 | WP_000424963.1 | glutamine-hydrolyzing GMP synthase | - |
| SAO46_RS02255 (SAO46_00413) | - | 456790..457326 (-) | 537 | WP_000551645.1 | hypothetical protein | - |
| SAO46_RS02260 (SAO46_00414) | - | 457718..458422 (-) | 705 | WP_000041877.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| SAO46_RS02265 (SAO46_00415) | - | 458822..459094 (-) | 273 | WP_000159790.1 | IS3 family transposase | - |
| SAO46_RS02275 (SAO46_00416) | - | 459355..459507 (-) | 153 | WP_000248840.1 | hypothetical protein | - |
| SAO46_RS02280 (SAO46_00417) | - | 459869..460276 (+) | 408 | WP_000423529.1 | DUF2992 family protein | - |
| SAO46_RS02285 (SAO46_00418) | - | 460323..460805 (+) | 483 | WP_000600866.1 | DUF523 domain-containing protein | - |
| SAO46_RS14435 | - | 461329..461694 (+) | 366 | WP_224061840.1 | NYN domain-containing protein | - |
| SAO46_RS02295 (SAO46_00420) | - | 461949..462308 (-) | 360 | WP_001021570.1 | DUF1304 domain-containing protein | - |
| SAO46_RS02300 (SAO46_00421) | - | 462327..463172 (-) | 846 | WP_001024369.1 | SDR family oxidoreductase | - |
| SAO46_RS02305 (SAO46_00422) | - | 463644..464324 (+) | 681 | WP_000668992.1 | superantigen-like protein SSL1 | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=260827 SAO46_RS02000 WP_000934799.1 418199..418702(+) (ssbA) [Staphylococcus aureus O46]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=260827 SAO46_RS02000 WP_000934799.1 418199..418702(+) (ssbA) [Staphylococcus aureus O46]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |