Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HAC_RS00245 | Genome accession | NC_008229 |
| Coordinates | 50858..51994 (+) | Length | 378 a.a. |
| NCBI ID | WP_011577038.1 | Uniprot ID | Q17ZL0 |
| Organism | Helicobacter acinonychis str. Sheeba | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 45858..56994
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAC_RS00210 (Hac_0047) | panD | 46291..46641 (+) | 351 | WP_041600152.1 | aspartate 1-decarboxylase | - |
| HAC_RS00215 (Hac_0048) | - | 46652..46945 (+) | 294 | WP_011577033.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HAC_RS00220 (Hac_0049) | - | 46945..47940 (+) | 996 | WP_011577034.1 | PDZ domain-containing protein | - |
| HAC_RS00225 (Hac_0050) | comB6 | 47948..49012 (+) | 1065 | WP_011577035.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HAC_RS00230 | comB7 | 49038..49175 (+) | 138 | WP_041600153.1 | hypothetical protein | Machinery gene |
| HAC_RS00235 (Hac_0052) | comB8 | 49172..49915 (+) | 744 | WP_011577036.1 | type IV secretion system protein | Machinery gene |
| HAC_RS00240 (Hac_0053) | comB9 | 49915..50865 (+) | 951 | WP_011577037.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HAC_RS00245 (Hac_0054) | comB10 | 50858..51994 (+) | 1137 | WP_011577038.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HAC_RS00250 (Hac_0055) | - | 52059..53471 (+) | 1413 | WP_041600249.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HAC_RS00255 (Hac_0056) | gmd | 53481..54626 (+) | 1146 | WP_011577040.1 | GDP-mannose 4,6-dehydratase | - |
| HAC_RS00260 (Hac_0057) | - | 54619..55551 (+) | 933 | WP_011577041.1 | GDP-L-fucose synthase family protein | - |
| HAC_RS00265 (Hac_0058) | - | 56017..56844 (-) | 828 | WP_011577042.1 | prephenate dehydrogenase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42212.95 Da Isoelectric Point: 9.8541
>NTDB_id=26065 HAC_RS00245 WP_011577038.1 50858..51994(+) (comB10) [Helicobacter acinonychis str. Sheeba]
MNKWLKGALIVVGGFITIVTTSLIYHQKPKAPLNNQPTLLNDDEVKYPLQDYTFTPSLQPTHTESSKDATIKALQHQLEV
ALKTLNAQKMNIPKEETKEPNNPPIEPQTKPTKKDVSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENRLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNKGNKEETTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNTDIFFPIPRDNEVIAEFLK
MNKWLKGALIVVGGFITIVTTSLIYHQKPKAPLNNQPTLLNDDEVKYPLQDYTFTPSLQPTHTESSKDATIKALQHQLEV
ALKTLNAQKMNIPKEETKEPNNPPIEPQTKPTKKDVSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENRLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNKGNKEETTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNTDIFFPIPRDNEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=26065 HAC_RS00245 WP_011577038.1 50858..51994(+) (comB10) [Helicobacter acinonychis str. Sheeba]
ATGAATAAGTGGCTCAAGGGGGCACTTATTGTTGTAGGGGGTTTTATAACGATTGTAACAACCTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAACAACCAACCCACTCTTTTAAATGATGATGAGGTGAAATACCCCCTACAAGATTACACTT
TCACTCCAAGCTTACAACCAACCCATACAGAAAGCTCCAAAGACGCTACTATAAAAGCCTTACAGCACCAACTAGAAGTC
GCTCTCAAAACCTTAAACGCCCAAAAAATGAATATTCCTAAAGAAGAAACTAAAGAACCCAACAATCCTCCCATAGAGCC
TCAAACAAAACCAACTAAAAAAGACGTTTCTTTAAAACAATTAGATTTATTAGCCGCTCGCATCACTCCTTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACTTGATTTTCCCAATGGATAACCCTAAAGGGATCGATGGCTTTACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAGGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATTGCACAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTTTTAA
TCCCTAAAGGCTCTAAAGTTATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTGTGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTTCAACGCTATGGCGTGCCTTTATTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCCGCTTTAAACAACAAAGGCAATAAAGAAGAGACGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTGAGAGACAAGAGCAAAATCGCCCCCATTGTTAT
CATTAGAGAGGGGAGTAGGGTATTCATTTCGCCTAATACTGACATTTTCTTCCCTATACCCAGAGACAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTCAAGGGGGCACTTATTGTTGTAGGGGGTTTTATAACGATTGTAACAACCTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAACAACCAACCCACTCTTTTAAATGATGATGAGGTGAAATACCCCCTACAAGATTACACTT
TCACTCCAAGCTTACAACCAACCCATACAGAAAGCTCCAAAGACGCTACTATAAAAGCCTTACAGCACCAACTAGAAGTC
GCTCTCAAAACCTTAAACGCCCAAAAAATGAATATTCCTAAAGAAGAAACTAAAGAACCCAACAATCCTCCCATAGAGCC
TCAAACAAAACCAACTAAAAAAGACGTTTCTTTAAAACAATTAGATTTATTAGCCGCTCGCATCACTCCTTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACTTGATTTTCCCAATGGATAACCCTAAAGGGATCGATGGCTTTACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAGGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATTGCACAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTTTTAA
TCCCTAAAGGCTCTAAAGTTATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTGTGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTTCAACGCTATGGCGTGCCTTTATTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCCGCTTTAAACAACAAAGGCAATAAAGAAGAGACGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTGAGAGACAAGAGCAAAATCGCCCCCATTGTTAT
CATTAGAGAGGGGAGTAGGGTATTCATTTCGCCTAATACTGACATTTTCTTCCCTATACCCAGAGACAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
88.889 |
100 |
0.889 |