Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | HAC_RS00225 | Genome accession | NC_008229 |
| Coordinates | 47948..49012 (+) | Length | 354 a.a. |
| NCBI ID | WP_011577035.1 | Uniprot ID | Q17ZL3 |
| Organism | Helicobacter acinonychis str. Sheeba | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 42948..54012
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAC_RS00195 (Hac_0044) | - | 43392..43805 (+) | 414 | WP_011577029.1 | universal stress protein | - |
| HAC_RS00200 (Hac_0045) | - | 43807..44082 (+) | 276 | WP_011577030.1 | ATP-dependent Clp protease adaptor ClpS | - |
| HAC_RS00205 (Hac_0046) | - | 44082..46301 (+) | 2220 | WP_011577031.1 | AAA family ATPase | - |
| HAC_RS00210 (Hac_0047) | panD | 46291..46641 (+) | 351 | WP_041600152.1 | aspartate 1-decarboxylase | - |
| HAC_RS00215 (Hac_0048) | - | 46652..46945 (+) | 294 | WP_011577033.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HAC_RS00220 (Hac_0049) | - | 46945..47940 (+) | 996 | WP_011577034.1 | PDZ domain-containing protein | - |
| HAC_RS00225 (Hac_0050) | comB6 | 47948..49012 (+) | 1065 | WP_011577035.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HAC_RS00230 | comB7 | 49038..49175 (+) | 138 | WP_041600153.1 | hypothetical protein | Machinery gene |
| HAC_RS00235 (Hac_0052) | comB8 | 49172..49915 (+) | 744 | WP_011577036.1 | type IV secretion system protein | Machinery gene |
| HAC_RS00240 (Hac_0053) | comB9 | 49915..50865 (+) | 951 | WP_011577037.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HAC_RS00245 (Hac_0054) | comB10 | 50858..51994 (+) | 1137 | WP_011577038.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HAC_RS00250 (Hac_0055) | - | 52059..53471 (+) | 1413 | WP_041600249.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 40314.41 Da Isoelectric Point: 8.8187
>NTDB_id=26061 HAC_RS00225 WP_011577035.1 47948..49012(+) (comB6) [Helicobacter acinonychis str. Sheeba]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQFVFNSAVALAFMFFAYKSLKEQNFFSVSTILEALLFVGFFVLFNY
ALKNPLHFYEFFQNAIFILPNMVTHALSQSLNHFSSHTLSLDFIFNHGFYALSFISDLSHSEISVWLFLSVLQAFFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVFACLKKCLALGFYKPFLLLVGFLNVSVTKALMDARMQEQQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLGTNMSQNALTSLQYVTTPPVTTALSSVSTSTSESVSKEKETH
SPTFKVETTRLDVKIPNFKQKKVKKDTINPKHEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQFVFNSAVALAFMFFAYKSLKEQNFFSVSTILEALLFVGFFVLFNY
ALKNPLHFYEFFQNAIFILPNMVTHALSQSLNHFSSHTLSLDFIFNHGFYALSFISDLSHSEISVWLFLSVLQAFFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVFACLKKCLALGFYKPFLLLVGFLNVSVTKALMDARMQEQQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLGTNMSQNALTSLQYVTTPPVTTALSSVSTSTSESVSKEKETH
SPTFKVETTRLDVKIPNFKQKKVKKDTINPKHEI
Nucleotide
Download Length: 1065 bp
>NTDB_id=26061 HAC_RS00225 WP_011577035.1 47948..49012(+) (comB6) [Helicobacter acinonychis str. Sheeba]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACACCGCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTCGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGTTCTTTGCTTATAAAAGTT
TGAAAGAGCAGAATTTCTTTAGCGTTAGCACGATTTTAGAGGCGTTATTGTTTGTGGGGTTTTTTGTGCTTTTTAACTAC
GCTTTGAAAAATCCTTTGCATTTTTATGAATTTTTTCAAAACGCTATTTTTATTTTGCCTAATATGGTTACCCATGCCCT
TTCTCAAAGCTTGAATCATTTTTCTAGCCACACGCTTTCATTAGATTTTATTTTCAATCATGGGTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGTCATAGTGAAATATCTGTTTGGCTTTTTTTAAGCGTTTTGCAAGCGTTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCACTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGTTTGCATGCCTTAAAAAATGCCTAGCCCTTGGGTTTTACAAGCCTTTTTTGTTATTGG
TTGGGTTTTTGAATGTGTCTGTAACTAAAGCCTTAATGGACGCTCGCATGCAGGAACAACAAGACTTGAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAATAG
CCTTAAAGAAACTTACAAACTCGCTACAAATCTGGGCACTAACATGAGCCAAAACGCTCTCACTTCTTTGCAATATGTTA
CTACCCCACCTGTTACTACTGCTCTCTCTAGCGTCTCTACTTCTACAAGCGAAAGCGTCTCTAAAGAAAAGGAAACGCAT
TCCCCCACATTCAAGGTAGAAACCACCCGATTGGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATAC
AATAAATCCAAAGCATGAAATTTAA
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACACCGCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTCGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGTTCTTTGCTTATAAAAGTT
TGAAAGAGCAGAATTTCTTTAGCGTTAGCACGATTTTAGAGGCGTTATTGTTTGTGGGGTTTTTTGTGCTTTTTAACTAC
GCTTTGAAAAATCCTTTGCATTTTTATGAATTTTTTCAAAACGCTATTTTTATTTTGCCTAATATGGTTACCCATGCCCT
TTCTCAAAGCTTGAATCATTTTTCTAGCCACACGCTTTCATTAGATTTTATTTTCAATCATGGGTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGTCATAGTGAAATATCTGTTTGGCTTTTTTTAAGCGTTTTGCAAGCGTTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCACTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGTTTGCATGCCTTAAAAAATGCCTAGCCCTTGGGTTTTACAAGCCTTTTTTGTTATTGG
TTGGGTTTTTGAATGTGTCTGTAACTAAAGCCTTAATGGACGCTCGCATGCAGGAACAACAAGACTTGAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAATAG
CCTTAAAGAAACTTACAAACTCGCTACAAATCTGGGCACTAACATGAGCCAAAACGCTCTCACTTCTTTGCAATATGTTA
CTACCCCACCTGTTACTACTGCTCTCTCTAGCGTCTCTACTTCTACAAGCGAAAGCGTCTCTAAAGAAAAGGAAACGCAT
TCCCCCACATTCAAGGTAGAAACCACCCGATTGGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATAC
AATAAATCCAAAGCATGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
87.571 |
100 |
0.876 |