Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PATL_RS00775 Genome accession   NC_008228
Coordinates   176706..177308 (+) Length   200 a.a.
NCBI ID   WP_011573086.1    Uniprot ID   A0A9J9B6W5
Organism   Paraglaciecola sp. T6c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 171706..182308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PATL_RS00765 (Patl_0146) uvrA 171926..174754 (-) 2829 WP_011573084.1 excinuclease ABC subunit UvrA -
  PATL_RS00770 (Patl_0147) - 175046..176389 (+) 1344 WP_011573085.1 MFS transporter -
  PATL_RS00775 (Patl_0148) ssb 176706..177308 (+) 603 WP_011573086.1 single-stranded DNA-binding protein Machinery gene
  PATL_RS00780 (Patl_0149) - 177901..180309 (+) 2409 WP_011573087.1 TonB-dependent receptor -
  PATL_RS22295 (Patl_0150) - 180520..180669 (+) 150 WP_011573088.1 DUF2256 domain-containing protein -
  PATL_RS00785 (Patl_0151) - 180712..182199 (-) 1488 WP_011573089.1 FAD-binding domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21820.87 Da        Isoelectric Point: 5.9340

>NTDB_id=26041 PATL_RS00775 WP_011573086.1 176706..177308(+) (ssb) [Paraglaciecola sp. T6c]
MASKGVNKVILVGNLGQDPEVRYMPNGNAVANLSIATSESWKDQQGQMQERTEWHRLTMYRRLAEVAGEYLRKGSQIYVE
GKLQTRKWQDQQGQDKYTTEVIVDQMQMLGGKGGGQSEGGFQGQQRQPAQRPAQGGQNAGGQRSGGQNSGGFQQSPNQGY
NQAPQGGQGNQGFNQAPQGGQNKPAPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=26041 PATL_RS00775 WP_011573086.1 176706..177308(+) (ssb) [Paraglaciecola sp. T6c]
ATGGCGAGCAAAGGCGTAAATAAAGTCATCTTGGTGGGCAACTTAGGGCAAGATCCTGAAGTACGTTATATGCCAAATGG
TAATGCGGTAGCGAACTTAAGCATCGCGACCAGTGAAAGCTGGAAAGACCAACAAGGGCAAATGCAAGAGCGCACCGAAT
GGCATCGCCTGACTATGTATCGCCGTTTAGCTGAAGTGGCTGGCGAATACTTGCGTAAAGGCTCACAAATTTACGTAGAA
GGTAAATTGCAAACCCGTAAATGGCAAGATCAGCAAGGCCAAGACAAATACACTACAGAAGTGATTGTCGACCAAATGCA
AATGTTAGGTGGTAAAGGCGGCGGTCAATCTGAAGGCGGTTTCCAAGGGCAGCAGCGTCAACCTGCACAGCGTCCTGCAC
AAGGCGGTCAAAATGCTGGCGGCCAGCGCTCTGGCGGTCAAAATTCAGGTGGTTTTCAACAATCTCCTAACCAAGGTTAC
AACCAAGCACCTCAAGGTGGCCAAGGCAATCAAGGTTTCAACCAAGCCCCGCAAGGCGGCCAAAACAAGCCAGCACCTAT
GGCTGAACCCGACTTTGATTTCGACGATGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.122

100

0.565
  ssb Glaesserella parasuis strain SC1401

54.545

99

0.54
  ssb Neisseria meningitidis MC58

45

100

0.45
  ssb Neisseria gonorrhoeae MS11

45

100

0.45

Multiple sequence alignment