Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RD1_RS11870 | Genome accession | NC_008209 |
| Coordinates | 2461914..2462414 (-) | Length | 166 a.a. |
| NCBI ID | WP_011568746.1 | Uniprot ID | Q166G4 |
| Organism | Roseobacter denitrificans OCh 114 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2456914..2467414
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RD1_RS11840 (RD1_2569) | glnA | 2457282..2458685 (-) | 1404 | WP_011568743.1 | type I glutamate--ammonia ligase | - |
| RD1_RS11845 (RD1_2570) | - | 2458734..2459072 (-) | 339 | WP_011568744.1 | P-II family nitrogen regulator | - |
| RD1_RS11850 | - | 2459243..2459926 (+) | 684 | WP_044033113.1 | NAD(P)H-hydrate epimerase | - |
| RD1_RS11855 | - | 2459968..2460825 (+) | 858 | WP_044033114.1 | NAD(P)H-hydrate dehydratase | - |
| RD1_RS11860 (RD1_2573) | - | 2460914..2461444 (-) | 531 | WP_011568745.1 | Hint domain-containing protein | - |
| RD1_RS11870 (RD1_2575) | ssb | 2461914..2462414 (-) | 501 | WP_011568746.1 | single-stranded DNA-binding protein | Machinery gene |
| RD1_RS11875 (RD1_2576) | - | 2462636..2463220 (+) | 585 | WP_011568747.1 | lytic transglycosylase domain-containing protein | - |
| RD1_RS11880 (RD1_2578) | - | 2463289..2465379 (-) | 2091 | WP_011568748.1 | ABC transporter ATP-binding protein | - |
| RD1_RS11885 (RD1_2580) | - | 2465464..2466681 (-) | 1218 | WP_011568749.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 17937.65 Da Isoelectric Point: 5.3255
>NTDB_id=26036 RD1_RS11870 WP_011568746.1 2461914..2462414(-) (ssb) [Roseobacter denitrificans OCh 114]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFSEPLARVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYSTEVVLRPYSSTLTMLDGRDSGGGGGNYGGGGGGGQMGYDDRGGDSYGGGGNAPSPAPSRDL
DDEIPF
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFSEPLARVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYSTEVVLRPYSSTLTMLDGRDSGGGGGNYGGGGGGGQMGYDDRGGDSYGGGGNAPSPAPSRDL
DDEIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=26036 RD1_RS11870 WP_011568746.1 2461914..2462414(-) (ssb) [Roseobacter denitrificans OCh 114]
ATGGCCGGCTCTGTAAACAAAGTAATCCTTATCGGCAATCTGGGGCGTGACCCTGAGGTCCGCAGCTTTCAGAACGGCGG
CAAAGTGTGCAACCTGCGGATTGCCACCTCCGAAACGTGGAAAGACCGCAACACCGGCGAGCGTAAGGAACGTACCGAGT
GGCATTCGGTGGCCATTTTCTCTGAACCCCTTGCGCGCGTGGCCGAACAGTATCTGCGCAAGGGCTCCAAAGTGTACCTT
GAGGGGCAGCTGGAGACGCGCAAGTGGCAGGATCAATCCGGGCAGGATCGCTATTCCACCGAAGTTGTGCTGCGGCCGTA
CTCGTCCACGCTGACCATGCTTGACGGTCGCGACTCCGGCGGGGGTGGCGGGAACTACGGAGGCGGCGGCGGTGGTGGCC
AGATGGGTTATGACGACCGTGGCGGCGACAGTTACGGTGGCGGTGGAAACGCGCCAAGCCCGGCACCTTCGCGCGATCTG
GATGATGAAATTCCGTTCTGA
ATGGCCGGCTCTGTAAACAAAGTAATCCTTATCGGCAATCTGGGGCGTGACCCTGAGGTCCGCAGCTTTCAGAACGGCGG
CAAAGTGTGCAACCTGCGGATTGCCACCTCCGAAACGTGGAAAGACCGCAACACCGGCGAGCGTAAGGAACGTACCGAGT
GGCATTCGGTGGCCATTTTCTCTGAACCCCTTGCGCGCGTGGCCGAACAGTATCTGCGCAAGGGCTCCAAAGTGTACCTT
GAGGGGCAGCTGGAGACGCGCAAGTGGCAGGATCAATCCGGGCAGGATCGCTATTCCACCGAAGTTGTGCTGCGGCCGTA
CTCGTCCACGCTGACCATGCTTGACGGTCGCGACTCCGGCGGGGGTGGCGGGAACTACGGAGGCGGCGGCGGTGGTGGCC
AGATGGGTTATGACGACCGTGGCGGCGACAGTTACGGTGGCGGTGGAAACGCGCCAAGCCCGGCACCTTCGCGCGATCTG
GATGATGAAATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50.538 |
100 |
0.566 |
| ssb | Vibrio cholerae strain A1552 |
53.179 |
100 |
0.554 |
| ssb | Neisseria meningitidis MC58 |
44.693 |
100 |
0.482 |
| ssb | Neisseria gonorrhoeae MS11 |
44.693 |
100 |
0.482 |