Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FORC42_RS24675 Genome accession   NZ_CP025318
Coordinates   4649299..4649835 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain FORC_042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4644299..4654835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC42_RS24650 (FORC42_4487) soxR 4646028..4646492 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  FORC42_RS24655 (FORC42_4488) soxS 4646578..4646901 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FORC42_RS24660 (FORC42_4489) pdeC 4646904..4648490 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  FORC42_RS24670 (FORC42_4490) yjcB 4648919..4649200 (+) 282 Protein_4542 YjcB family protein -
  FORC42_RS24675 (FORC42_4491) ssb 4649299..4649835 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FORC42_RS24680 (FORC42_4492) uvrA 4650089..4652911 (+) 2823 WP_024215782.1 excinuclease ABC subunit UvrA -
  FORC42_RS24685 (FORC42_4493) yjbR 4652946..4653302 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FORC42_RS24690 (FORC42_4494) yjbQ 4653306..4653722 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FORC42_RS24695 (FORC42_4495) aphA 4653833..4654546 (-) 714 WP_104951330.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=260073 FORC42_RS24675 WP_000168305.1 4649299..4649835(-) (ssb) [Escherichia coli strain FORC_042]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=260073 FORC42_RS24675 WP_000168305.1 4649299..4649835(-) (ssb) [Escherichia coli strain FORC_042]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment