Detailed information NTG0259892

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SmaCSM2_RS16915
• Genome accession: NZ_CP025298
• Coordinates: 3678375..3679748 (+)
• Length: 457 a.a.
• NCBI ID: WP_101765981.1
• Uniprot ID: A0AAD0FNC3
• Organism: Stenotrophomonas maltophilia strain CSM2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3673375..3684748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SmaCSM2_RS16900 (SmaCSM2_16900)	sucD	3674230..3675105 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
SmaCSM2_RS16905 (SmaCSM2_16905)	sucC	3675126..3676295 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
SmaCSM2_RS16910 (SmaCSM2_16910)	-	3676701..3678314 (+)	1614	WP_087923443.1	ATP-binding protein	-
SmaCSM2_RS16915 (SmaCSM2_16915)	pilR	3678375..3679748 (+)	1374	WP_101765981.1	sigma-54 dependent transcriptional regulator	Regulator
SmaCSM2_RS16920 (SmaCSM2_16920)	-	3679963..3680370 (+)	408	WP_158298006.1	hypothetical protein	-
SmaCSM2_RS16925 (SmaCSM2_16925)	pilB	3680480..3682210 (-)	1731	WP_101765982.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SmaCSM2_RS16930 (SmaCSM2_16930)	-	3682476..3682925 (-)	450	WP_080347436.1	pilin	-
SmaCSM2_RS16935 (SmaCSM2_16935)	pilA	3683036..3683485 (-)	450	WP_049442650.1	pilin	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49607.84 Da
• Isoelectric Point: 6.3808

>NTDB_id=259892 SmaCSM2_RS16915 WP_101765981.1 3678375..3679748(+) (pilR) [Stenotrophomonas maltophilia strain CSM2]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAASVLARLARSHGHPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=259892 SmaCSM2_RS16915 WP_101765981.1 3678375..3679748(+) (pilR) [Stenotrophomonas maltophilia strain CSM2]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACGGCTGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAATGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTAGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGTGGCCTGGTCAAGCATGCGCTGGAGCTCAACAACACCGAACGCCCCGCGCCCGGCCCCGCCG
CCGAACAGGGCGCGCGCCTGCTTGGCGACTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTCGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTACGCGCGATCCAGGAAAAATCGGTGCGCGCGGTCGGCGCCGC
CAACGAGGAACCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCGTCGGTGCTGGCACGGCTGGCCCGCAGCCACGGCCACCCGACGCCGCTGCTGGCCCCGTCGGCACTGGACGC
GCTGGCCCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAAGAAG
ACCGCATCGGTGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCACATGCCGAAGCCGTG
GTGGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAACAGCTCGAACGCAGCGCCATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTATAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.719	99.781	0.626
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49