Detailed information NTG0025986

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: RXYL_RS05920
• Genome accession: NC_008148
• Coordinates: 1189653..1190864 (-)
• Length: 403 a.a.
• NCBI ID: WP_011564148.1
• Uniprot ID: Q1AWU8
• Organism: Rubrobacter xylanophilus DSM 9941
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1184653..1195864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RXYL_RS19045 (Rxyl_1158)	-	1185209..1185616 (-)	408	WP_011564142.1	type IV pilin protein	-
RXYL_RS05895 (Rxyl_1159)	-	1185780..1187243 (-)	1464	WP_011564143.1	hypothetical protein	-
RXYL_RS05900 (Rxyl_1160)	-	1187243..1187866 (-)	624	WP_011564144.1	PulJ/GspJ family protein	-
RXYL_RS05905 (Rxyl_1161)	-	1187863..1188288 (-)	426	WP_011564145.1	type IV pilus modification PilV family protein	-
RXYL_RS05910 (Rxyl_1162)	-	1188281..1188862 (-)	582	WP_011564146.1	pilus assembly FimT family protein	-
RXYL_RS05915 (Rxyl_1163)	-	1188871..1189644 (-)	774	WP_011564147.1	sigma-70 family RNA polymerase sigma factor	-
RXYL_RS05920 (Rxyl_1164)	pilC	1189653..1190864 (-)	1212	WP_011564148.1	type II secretion system F family protein	Machinery gene
RXYL_RS05925 (Rxyl_1165)	pilT	1190865..1191968 (-)	1104	WP_011564149.1	type IV pilus twitching motility protein PilT	Machinery gene
RXYL_RS05930 (Rxyl_1166)	-	1191965..1193683 (-)	1719	WP_011564150.1	GspE/PulE family protein	-
RXYL_RS05935 (Rxyl_1167)	-	1193949..1195064 (+)	1116	WP_049761477.1	type IV pilus twitching motility protein PilT	-

Sequence

Protein

• Length: 403 a.a.
• Molecular weight: 43984.92 Da
• Isoelectric Point: 9.2638

>NTDB_id=25986 RXYL_RS05920 WP_011564148.1 1189653..1190864(-) (pilC) [Rubrobacter xylanophilus DSM 9941]
MGVFAYKARDRQGQVVRDTVEGPDPMSVAAALRSQGLLVIEVKEQGVGQRDILEPFKRVRLGDLVVFTRQLSTMINAGLP
IVRALHILEEQTANKKLRDVIVKVRSDVEAGMALSEALERHPEVFGRLYVEMVRAGEVGGVLDRVLLRVASQLEKDQELR
RKIKSALAYPAVVLVAAVLAAAFMLIFIVPIFARMFEDLGGTLPLPTRIAMGISDLLTGPWGLALAAALAGGGLLFARWL
RTEEGRRFWGRTVLRIPLRIGETVRKAVLARFARTLGSLVAAGVPILQAIEITAASSGNWVVENALMKSRDAIREGHPLH
RPLEGEAVFPPMVTRMIAVGEETGDLEGMLGKIADFYESEVEAAVKALTSIIEPVMIVIVGGIVGGIIISMYLPMFRIFE
LIE

Nucleotide

• Length: 1212 bp

>NTDB_id=25986 RXYL_RS05920 WP_011564148.1 1189653..1190864(-) (pilC) [Rubrobacter xylanophilus DSM 9941]
GTGGGCGTCTTCGCCTACAAGGCCCGCGACCGGCAGGGGCAGGTGGTGCGGGACACCGTGGAGGGCCCGGACCCGATGTC
CGTCGCCGCGGCGCTGCGCAGCCAGGGGCTTTTGGTCATCGAGGTCAAGGAGCAGGGCGTCGGGCAGAGGGACATCCTGG
AGCCCTTCAAGCGGGTGCGGCTCGGGGATCTCGTGGTGTTCACCCGGCAGCTCTCCACCATGATCAACGCCGGTCTGCCC
ATCGTGCGGGCGCTCCACATCCTCGAGGAGCAGACCGCCAACAAGAAGCTGCGCGACGTCATCGTGAAGGTCCGCTCCGA
CGTGGAGGCCGGGATGGCGCTCTCGGAGGCGCTGGAGCGGCACCCCGAGGTCTTCGGGCGGCTGTACGTGGAGATGGTGC
GGGCCGGGGAGGTCGGCGGGGTGCTGGACCGGGTGCTCCTGCGTGTCGCCTCCCAGCTGGAGAAGGACCAGGAGCTGCGG
CGCAAGATAAAGAGCGCCCTCGCCTACCCGGCCGTGGTGCTGGTGGCGGCGGTGCTCGCCGCGGCGTTCATGCTCATCTT
CATCGTCCCCATCTTCGCCCGCATGTTCGAGGATCTGGGCGGGACGCTCCCGCTGCCGACCCGGATCGCGATGGGGATCT
CCGACCTGCTCACCGGGCCCTGGGGGCTCGCCCTGGCGGCGGCGCTCGCGGGCGGGGGCCTCCTGTTCGCGCGCTGGCTC
CGGACCGAGGAGGGCCGGAGGTTCTGGGGCAGGACGGTGCTCCGGATACCCCTCAGGATCGGGGAGACCGTCAGAAAGGC
CGTGCTCGCCCGCTTCGCCCGCACGCTCGGCTCGCTCGTCGCCGCCGGCGTGCCCATCCTGCAGGCCATAGAGATCACCG
CCGCCTCCTCCGGCAACTGGGTGGTGGAGAACGCCCTCATGAAGAGCCGGGACGCCATCCGGGAGGGCCACCCGCTCCAC
CGGCCCCTGGAGGGCGAGGCCGTCTTCCCGCCCATGGTCACCCGCATGATCGCCGTCGGCGAGGAGACCGGCGATCTGGA
GGGGATGCTCGGCAAGATAGCGGACTTCTACGAGTCCGAGGTGGAGGCGGCGGTGAAGGCCCTCACCTCCATCATAGAGC
CCGTCATGATCGTGATCGTCGGGGGGATCGTGGGCGGGATCATCATCTCCATGTACCTCCCGATGTTCCGGATCTTCGAG
CTTATCGAGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (272-394)

• Type II secretion system (T2SS), protein F (T2SSF) (67-190)

3D structure

• AlphaFold DB: Q1AWU8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	49.505	100	0.496
pilC	Acinetobacter baylyi ADP1	37.717	100	0.377
pilC	Legionella pneumophila strain ERS1305867	37.5	99.256	0.372