Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CSC60_RS10375 Genome accession   NZ_CP030323
Coordinates   2037242..2038015 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain AR_475     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2032242..2043015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC60_RS10340 (CSC60_1906) - 2032495..2033265 (-) 771 WP_000473705.1 isoprenyl transferase -
  CSC60_RS10345 (CSC60_1907) frr 2033638..2034192 (-) 555 WP_001280006.1 ribosome recycling factor -
  CSC60_RS10350 (CSC60_1908) pyrH 2034211..2034933 (-) 723 WP_000057330.1 UMP kinase -
  CSC60_RS10355 (CSC60_1909) tsf 2035070..2035951 (-) 882 WP_000201386.1 translation elongation factor Ts -
  CSC60_RS10360 - 2035986..2036099 (-) 114 WP_031845108.1 hypothetical protein -
  CSC60_RS10365 (CSC60_1910) rpsB 2036133..2036900 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  CSC60_RS10370 - 2037099..2037191 (-) 93 WP_031788481.1 hypothetical protein -
  CSC60_RS10375 (CSC60_1911) codY 2037242..2038015 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CSC60_RS10380 (CSC60_1912) hslU 2038040..2039443 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  CSC60_RS10385 (CSC60_1913) hslV 2039509..2040054 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  CSC60_RS10390 (CSC60_1914) xerC 2040051..2040947 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  CSC60_RS10395 (CSC60_1915) trmFO 2041365..2042672 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=259725 CSC60_RS10375 WP_000055337.1 2037242..2038015(-) (codY) [Staphylococcus aureus strain AR_475]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=259725 CSC60_RS10375 WP_000055337.1 2037242..2038015(-) (codY) [Staphylococcus aureus strain AR_475]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment