Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | CXP37_RS16795 | Genome accession | NZ_CP025272 |
| Coordinates | 3634114..3635844 (-) | Length | 576 a.a. |
| NCBI ID | WP_010363784.1 | Uniprot ID | A0AAE8JVL2 |
| Organism | Xanthomonas vasicola pv. vasculorum strain Xv1601 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3629114..3640844
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXP37_RS16785 (CXP37_16580) | - | 3630310..3631923 (+) | 1614 | WP_010366203.1 | HAMP domain-containing sensor histidine kinase | - |
| CXP37_RS16790 (CXP37_16585) | pilR | 3632189..3633643 (+) | 1455 | WP_026112191.1 | sigma-54 dependent transcriptional regulator | Regulator |
| CXP37_RS16795 (CXP37_16590) | pilB | 3634114..3635844 (-) | 1731 | WP_010363784.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CXP37_RS16800 (CXP37_16595) | - | 3635880..3637208 (-) | 1329 | Protein_3093 | hypothetical protein | - |
| CXP37_RS16810 (CXP37_16605) | - | 3637841..3639430 (-) | 1590 | WP_010363790.1 | phosphoethanolamine transferase | - |
| CXP37_RS16815 (CXP37_16610) | pilA2 | 3639566..3639991 (-) | 426 | WP_010363792.1 | pilin | Machinery gene |
Sequence
Protein
Download Length: 576 a.a. Molecular weight: 62845.91 Da Isoelectric Point: 5.6078
>NTDB_id=259725 CXP37_RS16795 WP_010363784.1 3634114..3635844(-) (pilB) [Xanthomonas vasicola pv. vasculorum strain Xv1601]
MNSATTNLVGITGIARRLVQDGALEEAAARTAMEQAAAAKVPLPQWFSEKKLVSASQLAAANAVEFGMPLMDVSVFDANQ
NAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQSSNTSLGSSLGN
DDEEMGDLDVSTGDEDMGAGGDSGVDARGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVARAPV
KLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQKL
FLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDPD
IIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPD
NALLAEGFTPEQIANMELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMKA
SHGVTSLAEINRVTKD
MNSATTNLVGITGIARRLVQDGALEEAAARTAMEQAAAAKVPLPQWFSEKKLVSASQLAAANAVEFGMPLMDVSVFDANQ
NAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQSSNTSLGSSLGN
DDEEMGDLDVSTGDEDMGAGGDSGVDARGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVARAPV
KLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQKL
FLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDPD
IIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPD
NALLAEGFTPEQIANMELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMKA
SHGVTSLAEINRVTKD
Nucleotide
Download Length: 1731 bp
>NTDB_id=259725 CXP37_RS16795 WP_010363784.1 3634114..3635844(-) (pilB) [Xanthomonas vasicola pv. vasculorum strain Xv1601]
ATGAATTCAGCTACCACCAACCTCGTTGGCATCACTGGCATCGCTCGTCGCCTTGTGCAGGATGGCGCCTTGGAGGAAGC
CGCTGCGCGGACGGCGATGGAGCAGGCGGCCGCTGCCAAAGTGCCGCTGCCGCAGTGGTTTTCCGAGAAGAAGCTGGTGT
CGGCGTCGCAGCTGGCGGCAGCCAATGCCGTGGAATTCGGCATGCCGCTGATGGATGTGTCTGTGTTCGACGCTAACCAG
AACGCAGTCAAACTAGTCAGCGAGGAATTGCTCCAGAAGCACCAGGTACTGCCGCTGTTCAAGCGGGGCAACCGGTTGTT
CGTGGGAGTGAGCAACCCGACTCAGACCCGGGCACTGGATGACATCAAGTTCCACACCAATCTGGTGGTCGAGCCGATCC
TGGTCGACGAGGACCAGATTCGTCGCACCTTGGAACAATGGCAATCAAGTAATACTTCGCTTGGCTCGTCTTTGGGGAAC
GATGACGAGGAAATGGGAGATCTGGACGTCTCCACCGGCGACGAAGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGC
CAGGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCTTCGGACATCC
ATTTCGAGCCGTATGAAGACGACTACCGGGTGCGCTTGCGGATCGATGGGCTGTTGAAGAACGTGGCCAGGGCGCCGGTG
AAGCTGAATCAGCGCATCGCAGCTCGCTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGACGG
GCGCATCAAGCTCAACCTGTCTAAGACCAAGCAGATCGACTTTCGCGTGAGCACCTTGCCAACCCTGTTCGGCGAGAAGG
TGGTGCTGCGTATCCTGGACGCCAGCGCGGCCAAGCTCGGTATCGAGAAGCTGGGCTATGAGGCTGACCAGCAGAAGCTG
TTCCTGGACGCGATCCATAAGCCGTATGGCATGGTGCTGGTGACCGGGCCGACGGGCTCGGGTAAGACGGTGTCGCTGTA
TACGGCGCTGGGCATCCTCAACGACGAGACGCGGAACATTTCCACGGCAGAGGATCCGGTCGAAATTCGCTTGCCTGGCG
TCAATCAGGTGCAGCAGAACGTCAAGCGCGGCATGACCTTTGCCGCTGCGCTGCGTTCGTTCCTGCGTCAGGACCCGGAC
ATCATCATGGTCGGCGAAATCCGTGACCTGGAGACCGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCATATGGTGCT
GTCGACGCTGCATACCAACGATGCGCCGCAGACCATCGCGCGTCTGATGAATATGGGGATCGCGCCGTACAACATCACCT
CGTCGGTAACGTTGGTGATCGCGCAGCGTCTGGCGCGGCGTTTGTGCAACAACTGCAAGCGCAAGTCGACGTTGCCGGAC
AACGCATTGCTGGCGGAAGGTTTTACGCCCGAGCAAATCGCGAACATGGAGCTCTACGAGGCTGTGGGTTGCGACGAGTG
CACTGAAGGCTACAAGGGCCGTACCGGTATCTATCAGGTGATGCCGATGACCGACGAGATCGGCGCGATCGTGCTGGAAG
GCGGCAATGCGATGCAGATTGCCGAGGCGGCGCAGAAAATCGGTATCCGGGACTTGCGGCAGTCGGCGTTGATGAAGGCC
TCGCACGGCGTGACCAGCCTGGCTGAGATCAATCGGGTGACGAAGGATTGA
ATGAATTCAGCTACCACCAACCTCGTTGGCATCACTGGCATCGCTCGTCGCCTTGTGCAGGATGGCGCCTTGGAGGAAGC
CGCTGCGCGGACGGCGATGGAGCAGGCGGCCGCTGCCAAAGTGCCGCTGCCGCAGTGGTTTTCCGAGAAGAAGCTGGTGT
CGGCGTCGCAGCTGGCGGCAGCCAATGCCGTGGAATTCGGCATGCCGCTGATGGATGTGTCTGTGTTCGACGCTAACCAG
AACGCAGTCAAACTAGTCAGCGAGGAATTGCTCCAGAAGCACCAGGTACTGCCGCTGTTCAAGCGGGGCAACCGGTTGTT
CGTGGGAGTGAGCAACCCGACTCAGACCCGGGCACTGGATGACATCAAGTTCCACACCAATCTGGTGGTCGAGCCGATCC
TGGTCGACGAGGACCAGATTCGTCGCACCTTGGAACAATGGCAATCAAGTAATACTTCGCTTGGCTCGTCTTTGGGGAAC
GATGACGAGGAAATGGGAGATCTGGACGTCTCCACCGGCGACGAAGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGC
CAGGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCTTCGGACATCC
ATTTCGAGCCGTATGAAGACGACTACCGGGTGCGCTTGCGGATCGATGGGCTGTTGAAGAACGTGGCCAGGGCGCCGGTG
AAGCTGAATCAGCGCATCGCAGCTCGCTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGACGG
GCGCATCAAGCTCAACCTGTCTAAGACCAAGCAGATCGACTTTCGCGTGAGCACCTTGCCAACCCTGTTCGGCGAGAAGG
TGGTGCTGCGTATCCTGGACGCCAGCGCGGCCAAGCTCGGTATCGAGAAGCTGGGCTATGAGGCTGACCAGCAGAAGCTG
TTCCTGGACGCGATCCATAAGCCGTATGGCATGGTGCTGGTGACCGGGCCGACGGGCTCGGGTAAGACGGTGTCGCTGTA
TACGGCGCTGGGCATCCTCAACGACGAGACGCGGAACATTTCCACGGCAGAGGATCCGGTCGAAATTCGCTTGCCTGGCG
TCAATCAGGTGCAGCAGAACGTCAAGCGCGGCATGACCTTTGCCGCTGCGCTGCGTTCGTTCCTGCGTCAGGACCCGGAC
ATCATCATGGTCGGCGAAATCCGTGACCTGGAGACCGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCATATGGTGCT
GTCGACGCTGCATACCAACGATGCGCCGCAGACCATCGCGCGTCTGATGAATATGGGGATCGCGCCGTACAACATCACCT
CGTCGGTAACGTTGGTGATCGCGCAGCGTCTGGCGCGGCGTTTGTGCAACAACTGCAAGCGCAAGTCGACGTTGCCGGAC
AACGCATTGCTGGCGGAAGGTTTTACGCCCGAGCAAATCGCGAACATGGAGCTCTACGAGGCTGTGGGTTGCGACGAGTG
CACTGAAGGCTACAAGGGCCGTACCGGTATCTATCAGGTGATGCCGATGACCGACGAGATCGGCGCGATCGTGCTGGAAG
GCGGCAATGCGATGCAGATTGCCGAGGCGGCGCAGAAAATCGGTATCCGGGACTTGCGGCAGTCGGCGTTGATGAAGGCC
TCGCACGGCGTGACCAGCCTGGCTGAGATCAATCGGGTGACGAAGGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baylyi ADP1 |
55.556 |
100 |
0.556 |
| pilB | Acinetobacter baumannii D1279779 |
56.338 |
98.611 |
0.556 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.289 |
98.611 |
0.516 |
| pilF | Neisseria gonorrhoeae MS11 |
49.824 |
98.611 |
0.491 |
| pilB | Vibrio cholerae strain A1552 |
48.87 |
99.826 |
0.488 |
| pilB | Vibrio campbellii strain DS40M4 |
46.087 |
99.826 |
0.46 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
45.471 |
97.743 |
0.444 |