Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DQ228_RS07285 Genome accession   NZ_CP030250
Coordinates   1422464..1423150 (-) Length   228 a.a.
NCBI ID   WP_011226324.1    Uniprot ID   Q5M3F9
Organism   Streptococcus thermophilus strain CS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1417464..1428150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS07255 - 1417546..1418121 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  DQ228_RS07260 - 1418484..1419455 (+) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  DQ228_RS07265 - 1419459..1420571 (+) 1113 WP_014608554.1 cysteine desulfurase family protein -
  DQ228_RS07270 - 1420573..1420920 (+) 348 WP_014608555.1 DUF1831 domain-containing protein -
  DQ228_RS07275 - 1421064..1421723 (+) 660 WP_071417293.1 redox-sensing transcriptional repressor Rex -
  DQ228_RS07280 - 1421716..1422411 (+) 696 WP_014608557.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQ228_RS07285 radC 1422464..1423150 (-) 687 WP_011226324.1 RadC family protein Machinery gene
  DQ228_RS07290 - 1423329..1424669 (-) 1341 WP_223899627.1 DUF2142 domain-containing protein -
  DQ228_RS07295 - 1424818..1426563 (-) 1746 WP_011681434.1 rhamnan synthesis F family protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25845.89 Da        Isoelectric Point: 6.6449

>NTDB_id=259546 DQ228_RS07285 WP_011226324.1 1422464..1423150(-) (radC) [Streptococcus thermophilus strain CS20]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLADLSRLSLNELQEIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILY
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=259546 DQ228_RS07285 WP_011226324.1 1422464..1423150(-) (radC) [Streptococcus thermophilus strain CS20]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTACAAAAGGGTGCAGAGGTCTTGTCTGA
CCAGGAACTGTTGGCGATAGTGCTGCGAACGGGGACTAGGTCTGAGTCGGTCCTATCCATGGCCAACCGTATTTTAAAAG
GAATGACGAGTTTGGCTGATTTGTCTCGCTTGTCTCTGAATGAGCTTCAGGAGATTCCTGGTATTGGGCGTGTGAAATCC
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGTTCTGAGCAGATTATGTCTAG
TCAGCAGGTGGCACGTCGCATGATGTTAGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACCTTGATACGC
AGAATCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTTCGCCGTTCGATTGCCGAGCCGCGTGAGATTTTGTAT
TATGCTTGTCATCTGATGGCAACTTCCTTGATTGTGGTCCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGCAATGA
TATTGATTTTACTCAAAAGATTAAGAGGTCCTGTGACGACTTGGGAATTTGTCTTCTTGACCATCTGATTGTTGGAAAAT
CAACTTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAACTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(105-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.929

98.246

0.579
  radC Streptococcus pneumoniae R6

58.482

98.246

0.575
  radC Streptococcus pneumoniae D39

58.482

98.246

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

57.207

97.368

0.557
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.642

92.982

0.443