Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CXL14_RS06230 Genome accession   NZ_CP025258
Coordinates   1216435..1217124 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. SJ-10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1211435..1222124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXL14_RS06210 - 1211940..1213016 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  CXL14_RS06215 - 1213106..1214320 (-) 1215 WP_014419013.1 LCP family protein -
  CXL14_RS06220 - 1214325..1214972 (-) 648 WP_007614107.1 YigZ family protein -
  CXL14_RS06225 degS 1215195..1216358 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CXL14_RS06230 degU 1216435..1217124 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CXL14_RS06235 - 1217222..1218070 (+) 849 WP_003151387.1 DegV family protein -
  CXL14_RS06240 comFA 1218178..1219563 (+) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  CXL14_RS06245 - 1219621..1219905 (+) 285 WP_014419011.1 competence protein ComFB -
  CXL14_RS06250 comFC 1219911..1220600 (+) 690 WP_197535984.1 ComF family protein Machinery gene
  CXL14_RS06255 - 1220674..1221093 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CXL14_RS06260 flgM 1221163..1221429 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CXL14_RS06265 - 1221444..1221926 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=259537 CXL14_RS06230 WP_003219701.1 1216435..1217124(+) (degU) [Bacillus sp. SJ-10]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=259537 CXL14_RS06230 WP_003219701.1 1216435..1217124(+) (degU) [Bacillus sp. SJ-10]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGCTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment