Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CXL14_RS03495 Genome accession   NZ_CP025258
Coordinates   673211..673729 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus sp. SJ-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 668211..678729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXL14_RS03475 - 669289..669495 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  CXL14_RS03480 - 669542..671545 (+) 2004 WP_014419385.1 molybdopterin-dependent oxidoreductase -
  CXL14_RS03485 ychF 671672..672772 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  CXL14_RS03490 rpsF 672884..673171 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  CXL14_RS03495 ssbA 673211..673729 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  CXL14_RS03500 rpsR 673773..674012 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  CXL14_RS03505 - 674207..674788 (+) 582 WP_101287662.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  CXL14_RS03510 - 674785..675342 (+) 558 WP_101287663.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  CXL14_RS20345 - 675381..675587 (+) 207 WP_232789959.1 endonuclease/exonuclease/phosphatase family protein -
  CXL14_RS20350 - 675575..675721 (-) 147 Protein_641 exodeoxyribonuclease III -
  CXL14_RS20355 - 675669..675905 (+) 237 WP_014722092.1 endonuclease/exonuclease/phosphatase family protein -
  CXL14_RS03520 - 675968..676906 (+) 939 WP_021494593.1 LacI family DNA-binding transcriptional regulator -
  CXL14_RS03525 - 676962..677342 (+) 381 WP_094296144.1 VOC family protein -
  CXL14_RS03530 - 677374..678705 (-) 1332 WP_101287665.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=259529 CXL14_RS03495 WP_004392979.1 673211..673729(+) (ssbA) [Bacillus sp. SJ-10]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=259529 CXL14_RS03495 WP_004392979.1 673211..673729(+) (ssbA) [Bacillus sp. SJ-10]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment