Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | DQ225_RS20580 | Genome accession | NZ_CP030240 |
| Coordinates | 4206578..4207024 (+) | Length | 148 a.a. |
| NCBI ID | WP_000187523.1 | Uniprot ID | P76362 |
| Organism | Escherichia coli strain ER1709 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 4201578..4212024
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQ225_RS20570 (DQ225_21870) | agn43 | 4201809..4204928 (+) | 3120 | WP_000820410.1 | autotransporter adhesin Ag43 | - |
| DQ225_RS20575 (DQ225_21875) | yeeR | 4205049..4206581 (+) | 1533 | WP_001350525.1 | protein YeeR | - |
| DQ225_RS20580 (DQ225_21880) | radC | 4206578..4207024 (+) | 447 | WP_000187523.1 | RadC family protein | Machinery gene |
| DQ225_RS20585 (DQ225_21885) | yeeT | 4207087..4207308 (+) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| DQ225_RS20590 (DQ225_21890) | cbeA | 4207382..4207750 (+) | 369 | WP_001285584.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| DQ225_RS20595 (DQ225_21895) | cbtA | 4207839..4208213 (+) | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | - |
| DQ225_RS20600 (DQ225_21900) | yeeW | 4208210..4208404 (+) | 195 | WP_000988600.1 | DUF5983 family protein | - |
| DQ225_RS22550 (DQ225_21905) | - | 4208450..4208530 (+) | 81 | Protein_4017 | hypothetical protein | - |
| DQ225_RS20610 (DQ225_21910) | - | 4208819..4208947 (-) | 129 | Protein_4018 | transposase domain-containing protein | - |
| DQ225_RS20615 (DQ225_21915) | - | 4209019..4209201 (+) | 183 | WP_001016348.1 | EutP/PduV family microcompartment system protein | - |
| DQ225_RS20620 (DQ225_21920) | tmaR | 4209302..4209631 (-) | 330 | WP_000450409.1 | DUF496 family protein | - |
| DQ225_RS20625 (DQ225_21925) | yeeA | 4209802..4210860 (-) | 1059 | WP_001200891.1 | FUSC family protein | - |
| DQ225_RS20630 (DQ225_21930) | sbmC | 4211058..4211531 (-) | 474 | WP_001105415.1 | DNA gyrase inhibitor SbmC | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16556.98 Da Isoelectric Point: 7.6151
>NTDB_id=259473 DQ225_RS20580 WP_000187523.1 4206578..4207024(+) (radC) [Escherichia coli strain ER1709]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 447 bp
>NTDB_id=259473 DQ225_RS20580 WP_000187523.1 4206578..4207024(+) (radC) [Escherichia coli strain ER1709]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
76.351 |
0.419 |