Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   TM1040_RS11495 Genome accession   NC_008044
Coordinates   1521186..1521710 (+) Length   174 a.a.
NCBI ID   WP_011538761.1    Uniprot ID   Q1GGQ8
Organism   Ruegeria sp. TM1040     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1516186..1526710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM1040_RS11475 (TM1040_1421) - 1516976..1518391 (-) 1416 WP_011538757.1 tetratricopeptide repeat-containing sulfotransferase family protein -
  TM1040_RS11480 (TM1040_1422) - 1518520..1519656 (-) 1137 WP_011538758.1 cytochrome-c peroxidase -
  TM1040_RS11485 (TM1040_1423) - 1519788..1520162 (-) 375 WP_011538759.1 hypothetical protein -
  TM1040_RS11490 (TM1040_1424) - 1520328..1520903 (-) 576 WP_011538760.1 lytic transglycosylase domain-containing protein -
  TM1040_RS11495 (TM1040_1425) ssb 1521186..1521710 (+) 525 WP_011538761.1 single-stranded DNA-binding protein Machinery gene
  TM1040_RS11500 (TM1040_1426) - 1521820..1524237 (-) 2418 WP_011538762.1 GcvT family protein -
  TM1040_RS11505 (TM1040_1427) - 1524444..1525757 (-) 1314 WP_011538763.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18091.69 Da        Isoelectric Point: 5.2795

>NTDB_id=25922 TM1040_RS11495 WP_011538761.1 1521186..1521710(+) (ssb) [Ruegeria sp. TM1040]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFNEGLVRVAEQYLRKGSKVYV
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGRGEGGGGGFGGGQGGGDYGGGGGGYGGGGSYGGGGGNQGGGFGG
GGPSQNIDDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=25922 TM1040_RS11495 WP_011538761.1 1521186..1521710(+) (ssb) [Ruegeria sp. TM1040]
ATGGCCGGATCCCTGAACAAAGTAATGTTGATCGGCAACCTTGGCCGCGACCCCGAGGTGCGCAGCTTCCAGAACGGTGG
CAAGGTCTGCAACCTGCGGATTGCGACCTCCGAAACCTGGAAAGACCGCAACACCGGCGAGCGCCGCGAGAAGACCGAGT
GGCACTCGGTTGCGATCTTCAACGAAGGTCTGGTGCGTGTGGCAGAGCAATATCTGCGCAAAGGGTCCAAGGTCTATGTC
GAAGGTCAGCTGCAGACCCGCAAGTGGCAAGACCAGAGCGGCCAGGATCGCTATTCTACTGAGGTTGTGCTGCAGGGCTT
TGGCTCCACACTCACCATGCTCGACGGTCGTGGCGAAGGCGGCGGTGGCGGCTTTGGCGGTGGTCAGGGCGGCGGCGACT
ACGGTGGCGGCGGGGGCGGCTACGGTGGTGGCGGCAGCTATGGCGGCGGCGGTGGCAACCAGGGCGGTGGCTTTGGCGGC
GGTGGCCCCTCGCAAAACATCGACGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1GGQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.529
  ssb Vibrio cholerae strain A1552

51.724

100

0.517
  ssb Neisseria meningitidis MC58

41.667

100

0.431
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.42

Multiple sequence alignment