Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   STER_RS00375 Genome accession   NC_008532
Coordinates   62124..62714 (+) Length   196 a.a.
NCBI ID   WP_011680603.1    Uniprot ID   Q03MX8
Organism   Streptococcus thermophilus LMD-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57124..67714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS00350 (STER_0069) - 58254..58709 (-) 456 WP_011680598.1 DUF3021 domain-containing protein -
  STER_RS00355 (STER_0070) - 58706..59097 (-) 392 Protein_44 LytTR family DNA-binding domain-containing protein -
  STER_RS00360 (STER_0071) - 59321..59626 (+) 306 WP_014621013.1 hypothetical protein -
  STER_RS00365 (STER_0072) hexB 59678..61621 (+) 1944 WP_011680601.1 DNA mismatch repair endonuclease MutL Machinery gene
  STER_RS00370 (STER_0073) - 61751..61972 (+) 222 WP_011680602.1 hypothetical protein -
  STER_RS00375 (STER_0074) ruvA 62124..62714 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA Machinery gene
  STER_RS00380 (STER_0075) - 62721..63275 (+) 555 WP_011680604.1 DNA-3-methyladenine glycosylase I -
  STER_RS00385 (STER_0076) cinA 63371..64642 (+) 1272 WP_011680605.1 competence/damage-inducible protein A Machinery gene
  STER_RS00390 (STER_0077) recA 64678..65817 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  STER_RS00395 (STER_0078) spx 65994..66392 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21683.98 Da        Isoelectric Point: 5.2834

>NTDB_id=25911 STER_RS00375 WP_011680603.1 62124..62714(+) (ruvA) [Streptococcus thermophilus LMD-9]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=25911 STER_RS00375 WP_011680603.1 62124..62714(+) (ruvA) [Streptococcus thermophilus LMD-9]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03MX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444

Multiple sequence alignment