Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DP112_RS04340 Genome accession   NZ_CP030125
Coordinates   859335..860015 (+) Length   226 a.a.
NCBI ID   WP_002935253.1    Uniprot ID   Q83VP0
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 854335..865015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS04325 (DP112_04325) - 854822..855805 (-) 984 WP_002940816.1 L-lactate dehydrogenase -
  DP112_RS04330 (DP112_04330) gyrA 855994..858438 (+) 2445 WP_024383413.1 DNA gyrase subunit A -
  DP112_RS04335 (DP112_04335) - 858509..859221 (+) 713 Protein_787 class A sortase -
  DP112_RS04340 (DP112_04340) radC 859335..860015 (+) 681 WP_002935253.1 DNA repair protein RadC Machinery gene
  DP112_RS04345 (DP112_04345) - 860012..860702 (-) 691 Protein_789 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DP112_RS04350 (DP112_04350) - 860706..861344 (-) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  DP112_RS04355 (DP112_04355) - 861478..861680 (-) 203 Protein_791 DUF4649 family protein -
  DP112_RS04360 (DP112_04360) - 861682..862025 (-) 344 Protein_792 DUF1831 domain-containing protein -
  DP112_RS11245 (DP112_04365) - 862027..862214 (-) 188 Protein_793 cysteine desulfurase -
  DP112_RS11250 - 862214..862300 (-) 87 Protein_794 cysteine desulfurase -
  DP112_RS04375 (DP112_04375) - 862302..863415 (-) 1114 Protein_795 cysteine desulfurase family protein -
  DP112_RS04380 (DP112_04380) - 863399..864403 (-) 1005 WP_114866437.1 ribose-phosphate diphosphokinase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25766.97 Da        Isoelectric Point: 7.4771

>NTDB_id=258942 DP112_RS04340 WP_002935253.1 859335..860015(+) (radC) [Streptococcus suis strain HA1003]
MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=258942 DP112_RS04340 WP_002935253.1 859335..860015(+) (radC) [Streptococcus suis strain HA1003]
ATGTATCAAATTGAATTTAAAGAAGAGGCCATTCTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAATTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAGCGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGCATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCGAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(108-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83VP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.333

99.558

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482