Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DP112_RS02200 Genome accession   NZ_CP030125
Coordinates   422591..423256 (+) Length   221 a.a.
NCBI ID   WP_114866241.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417591..428256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS02175 (DP112_02175) - 417802..419202 (+) 1401 WP_024377222.1 Cof-type HAD-IIB family hydrolase -
  DP112_RS02180 (DP112_02180) - 419204..419575 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  DP112_RS02185 (DP112_02185) cysK 419601..420527 (-) 927 WP_029172049.1 cysteine synthase A -
  DP112_RS02190 (DP112_02190) - 420617..421249 (-) 633 WP_161947046.1 YigZ family protein -
  DP112_RS02195 (DP112_02195) comFA/cflA 421306..422598 (+) 1293 WP_114866240.1 DEAD/DEAH box helicase Machinery gene
  DP112_RS02200 (DP112_02200) comFC/cflB 422591..423256 (+) 666 WP_114866241.1 ComF family protein Machinery gene
  DP112_RS02205 (DP112_02205) raiA 423333..423875 (+) 543 WP_014637536.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25768.58 Da        Isoelectric Point: 8.2726

>NTDB_id=258930 DP112_RS02200 WP_114866241.1 422591..423256(+) (comFC/cflB) [Streptococcus suis strain HA1003]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGTCEECFLTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKLVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFSDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=258930 DP112_RS02200 WP_114866241.1 422591..423256(+) (comFC/cflB) [Streptococcus suis strain HA1003]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCACCTGTGAAGAATGTTTTTTGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACTAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTTCTGATTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGTGGGTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCG
TCTAAAAATCGAGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATACACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATCGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48