Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DP112_RS00365 Genome accession   NZ_CP030125
Coordinates   61662..62252 (+) Length   196 a.a.
NCBI ID   WP_114866094.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56662..67252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS00355 (DP112_00355) - 58045..59568 (+) 1524 WP_114866093.1 quinol oxidase -
  DP112_RS00360 (DP112_00360) hexB 59686..61623 (+) 1938 WP_029172056.1 DNA mismatch repair endonuclease MutL Machinery gene
  DP112_RS00365 (DP112_00365) ruvA 61662..62252 (+) 591 WP_114866094.1 Holliday junction branch migration protein RuvA Machinery gene
  DP112_RS00370 (DP112_00370) - 62493..63062 (+) 570 WP_114866095.1 DNA-3-methyladenine glycosylase I -
  DP112_RS00375 (DP112_00375) cinA 63099..64280 (+) 1182 WP_114866096.1 competence/damage-inducible protein A Machinery gene
  DP112_RS00380 (DP112_00380) recA 64332..65483 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  DP112_RS00385 (DP112_00385) spx 65719..66117 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  DP112_RS00390 (DP112_00390) - 66217..66483 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  DP112_RS00395 (DP112_00395) ruvX 66483..66902 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  DP112_RS00400 (DP112_00400) - 66914..67234 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21707.04 Da        Isoelectric Point: 5.0727

>NTDB_id=258904 DP112_RS00365 WP_114866094.1 61662..62252(+) (ruvA) [Streptococcus suis strain HA1003]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTQQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVISEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFDGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=258904 DP112_RS00365 WP_114866094.1 61662..62252(+) (ruvA) [Streptococcus suis strain HA1003]
ATGTACGACTATATCAAAGGAATTTTAACGAAAATAACTGCAAAATATATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAACCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCAGCAGGTGATTCGTG
AAGATGCTCATTTGCTTTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTCGATGATAATGATGGGCTTGTTCGTGCCATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTTATCA
GCGAAGAAGCTGGTCCTGTCCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTCGAAGAAGCTATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCTGAACTCAAGAAAATCAAGAAATTCTTCGACGGCACCAATGACACCGCAGAAAACTACAT
CAAGTCAGCACTTAAAATGTTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.127

100

0.755
  ruvA Streptococcus pneumoniae D39

75.127

100

0.755
  ruvA Streptococcus pneumoniae TIGR4

75.127

100

0.755
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408