Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RADP37_RS15580 Genome accession   NZ_CP025189
Coordinates   2618427..2618960 (+) Length   177 a.a.
NCBI ID   WP_058390546.1    Uniprot ID   A0A1S8D9X7
Organism   Roseomonas mucosa strain AD2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2613427..2623960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RADP37_RS15570 (RADP37_01779) - 2614138..2614959 (+) 822 WP_026032976.1 squalene/phytoene synthase family protein -
  RADP37_RS15575 (RADP37_01780) uvrA 2615011..2618013 (-) 3003 WP_314214043.1 excinuclease ABC subunit UvrA -
  RADP37_RS15580 (RADP37_01781) ssb 2618427..2618960 (+) 534 WP_058390546.1 single-stranded DNA-binding protein Machinery gene
  RADP37_RS15585 (RADP37_01782) gyrA 2619113..2621794 (+) 2682 WP_390890330.1 DNA gyrase subunit A -
  RADP37_RS15590 (RADP37_01783) coaD 2621787..2622314 (+) 528 WP_019459811.1 pantetheine-phosphate adenylyltransferase -
  RADP37_RS15595 (RADP37_01784) - 2622375..2622899 (+) 525 WP_027297167.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18618.39 Da        Isoelectric Point: 7.0237

>NTDB_id=258696 RADP37_RS15580 WP_058390546.1 2618427..2618960(+) (ssb) [Roseomonas mucosa strain AD2]
MAGSVNKVILVGNLGRDPEVRNFQNGGKVVNLRIATSENYKDREGNRQERTEWHSVAIFNERLGEVAEKYLRKGSTVYIE
GKLETRKWQDKDGQDRYTTEIVLRNFGGELTMIGGRASGGEGGEGGGYSGGGGGGFGGGPRAGGGERGGAPGGRSPSRGG
GGGWDAPKGDLDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=258696 RADP37_RS15580 WP_058390546.1 2618427..2618960(+) (ssb) [Roseomonas mucosa strain AD2]
ATGGCCGGCAGCGTCAACAAGGTGATCCTGGTGGGCAATCTGGGGCGCGACCCCGAGGTCCGCAACTTCCAGAACGGCGG
CAAGGTGGTGAACCTCCGCATCGCCACCAGCGAGAACTACAAGGACCGCGAGGGGAACCGCCAGGAGCGGACCGAGTGGC
ACTCGGTGGCGATCTTCAACGAGCGCCTGGGCGAGGTGGCCGAGAAGTACCTGCGCAAGGGCTCCACGGTCTATATCGAG
GGCAAGCTCGAGACCCGGAAGTGGCAGGACAAGGACGGCCAGGACCGGTACACCACCGAGATCGTGCTGCGGAACTTCGG
CGGCGAGCTGACCATGATCGGCGGCCGCGCCAGCGGCGGCGAGGGTGGTGAGGGCGGCGGCTATTCCGGCGGCGGCGGTG
GCGGCTTCGGCGGTGGCCCGCGCGCCGGCGGCGGAGAGCGCGGCGGCGCCCCCGGCGGACGCTCGCCCTCGCGTGGTGGC
GGCGGCGGCTGGGATGCGCCGAAGGGCGACCTGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S8D9X7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.486
  ssb Vibrio cholerae strain A1552

48.571

98.87

0.48
  ssb Neisseria meningitidis MC58

42.623

100

0.441
  ssb Neisseria gonorrhoeae MS11

42.541

100

0.435

Multiple sequence alignment