Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CXB48_RS03660 | Genome accession | NZ_CP025149 |
| Coordinates | 766283..766774 (+) | Length | 163 a.a. |
| NCBI ID | WP_003281797.1 | Uniprot ID | A0A210XTT8 |
| Organism | Stutzerimonas stutzeri strain SGAir0442 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 761283..771774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXB48_RS03650 (CXB48_03635) | uvrA | 761775..764612 (-) | 2838 | WP_013981718.1 | excinuclease ABC subunit UvrA | - |
| CXB48_RS03655 (CXB48_03640) | - | 764744..766111 (+) | 1368 | WP_108241452.1 | MFS transporter | - |
| CXB48_RS03660 (CXB48_03645) | ssb | 766283..766774 (+) | 492 | WP_003281797.1 | single-stranded DNA-binding protein | Machinery gene |
| CXB48_RS03665 (CXB48_03650) | - | 766785..767669 (+) | 885 | WP_049326035.1 | sugar nucleotide-binding protein | - |
| CXB48_RS03670 (CXB48_03655) | - | 767662..768591 (+) | 930 | WP_108241453.1 | NAD-dependent epimerase/dehydratase family protein | - |
| CXB48_RS03675 (CXB48_03660) | - | 768662..768757 (-) | 96 | Protein_718 | OmpW family outer membrane protein | - |
| CXB48_RS03680 (CXB48_03665) | - | 768823..769812 (+) | 990 | WP_108241225.1 | IS5 family transposase | - |
| CXB48_RS03685 (CXB48_03670) | - | 769892..770575 (-) | 684 | WP_272867579.1 | OmpW/AlkL family protein | - |
| CXB48_RS03690 (CXB48_03675) | - | 770760..771545 (+) | 786 | WP_013981723.1 | DUF3450 domain-containing protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18314.38 Da Isoelectric Point: 5.9492
>NTDB_id=258668 CXB48_RS03660 WP_003281797.1 766283..766774(+) (ssb) [Stutzerimonas stutzeri strain SGAir0442]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF
Nucleotide
Download Length: 492 bp
>NTDB_id=258668 CXB48_RS03660 WP_003281797.1 766283..766774(+) (ssb) [Stutzerimonas stutzeri strain SGAir0442]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCGGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCGGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.571 |
100 |
0.607 |
| ssb | Neisseria gonorrhoeae MS11 |
47.727 |
100 |
0.515 |
| ssb | Glaesserella parasuis strain SC1401 |
45.355 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.503 |