Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DOU34_RS11900 Genome accession   NZ_CP030097
Coordinates   2438812..2439507 (-) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2433812..2444507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS11870 - 2433827..2434630 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  DOU34_RS11875 minD 2434758..2435561 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  DOU34_RS11880 minC 2435564..2436244 (-) 681 WP_003152653.1 septum site-determining protein MinC -
  DOU34_RS11885 mreD 2436298..2436816 (-) 519 WP_007408167.1 rod shape-determining protein MreD -
  DOU34_RS11890 mreC 2436813..2437676 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  DOU34_RS11895 mreB 2437707..2438720 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  DOU34_RS11900 ysxA/radC 2438812..2439507 (-) 696 WP_007408165.1 DNA repair protein RadC Machinery gene
  DOU34_RS11905 - 2439539..2440108 (-) 570 WP_007408164.1 Maf family protein -
  DOU34_RS11910 - 2440249..2441250 (-) 1002 WP_061046586.1 SPOR domain-containing protein -
  DOU34_RS11915 comC 2441377..2442129 (-) 753 WP_061046585.1 A24 family peptidase Machinery gene
  DOU34_RS11920 - 2442269..2443561 (-) 1293 WP_007408161.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=258581 DOU34_RS11900 WP_007408165.1 2438812..2439507(-) (ysxA/radC) [Bacillus amyloliquefaciens strain SH-B74]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=258581 DOU34_RS11900 WP_007408165.1 2438812..2439507(-) (ysxA/radC) [Bacillus amyloliquefaciens strain SH-B74]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGTGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429