Detailed information    

insolico Bioinformatically predicted

Overview


Name   stkP   Type   Regulator
Locus tag   DOU34_RS06895 Genome accession   NZ_CP030097
Coordinates   1351310..1353253 (+) Length   647 a.a.
NCBI ID   WP_061046795.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context


Location: 1346310..1358253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS06870 def 1346684..1347166 (+) 483 WP_007409747.1 peptide deformylase -
  DOU34_RS06875 fmt 1347171..1348124 (+) 954 WP_061046797.1 methionyl-tRNA formyltransferase -
  DOU34_RS06880 rsmB 1348111..1349454 (+) 1344 WP_061046796.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  DOU34_RS06885 rlmN 1349458..1350549 (+) 1092 WP_003154339.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  DOU34_RS06890 - 1350555..1351316 (+) 762 WP_007409750.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  DOU34_RS06895 stkP 1351310..1353253 (+) 1944 WP_061046795.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  DOU34_RS06900 rsgA 1353268..1354158 (+) 891 WP_061046794.1 ribosome small subunit-dependent GTPase A -
  DOU34_RS06905 rpe 1354160..1354810 (+) 651 WP_012117536.1 ribulose-phosphate 3-epimerase -
  DOU34_RS06910 - 1354879..1355523 (+) 645 WP_061046793.1 thiamine diphosphokinase -
  DOU34_RS06915 spoVM 1355610..1355690 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  DOU34_RS06920 rpmB 1355768..1355956 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  DOU34_RS06925 - 1356215..1356577 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -

Sequence


Protein


Download         Length: 647 a.a.        Molecular weight: 71665.24 Da        Isoelectric Point: 4.9835

>NTDB_id=258540 DOU34_RS06895 WP_061046795.1 1351310..1353253(+) (stkP) [Bacillus amyloliquefaciens strain SH-B74]
MLTGKRISGRYHILRPIGGGGMANVFLAEDIILEREVAIKILRFDFVNDIDFIRRFRREAQSASSLDHPNIVSIYDIGEE
GDIYYIVMEYVEGMTLKEYINAHGPLHPKEALSVMEQIVSAIAHAHQNHIVHRDIKPHNILIDHLGHIKVTDFGIATALT
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGKIPFDGESAVSIALKHLQTETPSARKWNPSIPQS
VENIILKATAKDPFHRYESAEDMEADIRTAFDAGRLNEQKFSVQDDEEMTKAIPVITDGAKAAPQAETPGETDDKEQQPA
KKKKRKWPWVLLAVCFIFIMAAVLAVTVFPSLFMPKDVSVPDVRGMKYEKAEALLEKNGLRADPDITDIEDEKIEEELMV
KTDPKAGSTVKEGSSVKLYKSIGKPKTQLIDVKGRQIGDAKKALKEKGFKHVNVKEENDDGEAGTVIDQDPSAGTDMVAS
DDEVNLTVSLGPADVTLRDLKTYSKEAASGYLEDNGLQLVEKQAHSDDVPEGQVMKQEPAAGTAVKPGSNVEVTFSLGPE
EKPAKTVKEKISIPYEPEHEGDELEVQIAIDDKDHSISDTYDSFKIKEPTEKTIELKIDQGQKGYYQVMVDHKVVSYKTI
EYPKDND

Nucleotide


Download         Length: 1944 bp        

>NTDB_id=258540 DOU34_RS06895 WP_061046795.1 1351310..1353253(+) (stkP) [Bacillus amyloliquefaciens strain SH-B74]
GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCATTGGCGGCGGCGGAATGGCAAACGTTTTTTT
AGCTGAGGACATCATTCTCGAACGTGAAGTCGCAATTAAAATTCTGCGGTTTGACTTTGTGAATGACATTGATTTTATCA
GGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTCGATCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAA
GGCGATATTTATTACATTGTCATGGAATATGTGGAAGGCATGACATTAAAGGAATACATAAACGCACACGGACCGCTTCA
TCCGAAAGAAGCGCTGTCCGTTATGGAGCAGATCGTCTCGGCCATCGCCCATGCCCATCAAAACCATATCGTGCACCGGG
ATATTAAACCGCACAATATATTGATAGATCATTTAGGGCATATCAAGGTGACGGATTTCGGAATCGCCACAGCGCTTACG
TCTACGACAATCACACATACGAATTCTGTGCTGGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGAGGCGGTCTGGC
AACGAAAAAATCAGATATTTACGCGCTCGGCATCGTGCTGTTTGAGCTTTTAACAGGTAAAATTCCTTTTGACGGAGAAT
CAGCCGTCAGCATAGCGCTAAAGCATCTGCAAACAGAAACGCCTTCCGCCAGAAAGTGGAACCCTTCCATTCCGCAGAGC
GTCGAAAACATTATTTTAAAGGCAACCGCTAAAGACCCGTTTCACCGCTATGAAAGCGCCGAGGACATGGAAGCGGACAT
CAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTTTCCGTGCAGGATGATGAGGAAATGACAAAAGCCATTC
CCGTTATTACTGACGGCGCAAAAGCCGCGCCTCAGGCGGAAACGCCGGGGGAGACGGATGATAAGGAACAGCAGCCAGCC
AAAAAGAAAAAACGGAAATGGCCGTGGGTTTTGCTGGCCGTCTGTTTCATTTTCATTATGGCGGCTGTTCTTGCGGTCAC
CGTGTTCCCGTCTTTATTTATGCCTAAAGATGTAAGTGTCCCCGACGTACGGGGCATGAAGTACGAAAAAGCGGAAGCCC
TGCTTGAAAAGAACGGGCTACGGGCGGATCCTGATATAACGGACATTGAAGATGAAAAAATAGAAGAGGAATTAATGGTC
AAAACGGACCCAAAAGCGGGGTCTACCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGCATCGGAAAACCGAAAAC
CCAGCTGATCGACGTGAAAGGACGGCAGATCGGCGACGCAAAAAAAGCGCTGAAGGAAAAAGGCTTCAAACATGTCAATG
TCAAAGAAGAAAACGATGACGGCGAGGCCGGCACCGTAATTGATCAGGACCCGTCAGCCGGCACAGATATGGTCGCAAGC
GACGATGAAGTCAATCTAACGGTCAGCCTCGGCCCGGCGGACGTTACGCTGAGGGACTTAAAGACTTACAGCAAAGAAGC
GGCTTCAGGGTATCTTGAAGATAACGGCCTGCAGCTTGTTGAAAAACAAGCCCATTCAGATGACGTGCCGGAAGGACAAG
TCATGAAACAAGAGCCGGCAGCCGGCACTGCGGTTAAGCCGGGAAGTAATGTTGAAGTGACGTTCTCGCTCGGACCTGAA
GAAAAACCGGCGAAAACGGTAAAAGAAAAAATCAGCATTCCTTACGAACCCGAACATGAAGGGGACGAGCTTGAAGTGCA
AATCGCCATCGATGATAAGGACCACAGCATCTCTGATACGTATGACTCATTTAAAATAAAAGAGCCGACTGAAAAAACAA
TTGAACTGAAGATTGATCAGGGACAGAAGGGGTATTATCAAGTGATGGTCGATCATAAAGTCGTCAGCTACAAAACGATT
GAATACCCGAAAGATAATGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

38.636

95.209

0.368

  stkP Streptococcus pneumoniae D39

38.474

95.209

0.366

  stkP Streptococcus pneumoniae R6

38.474

95.209

0.366

  stkP Streptococcus pneumoniae Rx1

38.312

95.209

0.365

  pknB Streptococcus mutans UA159

40.838

88.563

0.362