Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CW735_RS01190 Genome accession   NZ_CP025115
Coordinates   272285..272890 (+) Length   201 a.a.
NCBI ID   WP_100970747.1    Uniprot ID   -
Organism   Alteromonas sp. MB-3u-76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 267285..277890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW735_RS01175 (CW735_01175) galK 267677..268816 (+) 1140 WP_071978314.1 galactokinase -
  CW735_RS01180 (CW735_01180) - 268945..269979 (+) 1035 WP_100970746.1 IS110 family transposase -
  CW735_RS01185 (CW735_01185) - 270407..271969 (+) 1563 WP_071978315.1 sodium/sugar symporter -
  CW735_RS01190 (CW735_01190) ssb 272285..272890 (+) 606 WP_100970747.1 single-stranded DNA-binding protein Machinery gene
  CW735_RS01195 (CW735_01195) - 273348..274637 (+) 1290 WP_100970748.1 dienelactone hydrolase family protein -
  CW735_RS19460 - 274675..275040 (-) 366 WP_157812633.1 hypothetical protein -
  CW735_RS01205 (CW735_01205) ltrA 275447..276718 (+) 1272 WP_100970749.1 group II intron reverse transcriptase/maturase -
  CW735_RS01210 (CW735_01210) - 276833..277870 (+) 1038 WP_100970721.1 IS110 family transposase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21764.70 Da        Isoelectric Point: 4.9930

>NTDB_id=258396 CW735_RS01190 WP_100970747.1 272285..272890(+) (ssb) [Alteromonas sp. MB-3u-76]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQPQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEAGGRGGEAGGGNGGYQRPQNNQGGGYQNQGGGYNQAPAQGGQQQG
GYNQNQGGGFNQAPAQGGNQPQPKTPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=258396 CW735_RS01190 WP_100970747.1 272285..272890(+) (ssb) [Alteromonas sp. MB-3u-76]
ATGGCAACGAAAGGCGTGAACAAGGTCATTCTTGTAGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCGAACGG
AAACGCCGTTGCAAACCTAAGTCTTGCAACTAGCGAAAGCTGGAAGGATCAGCAGGGACAACCGCAAGAGCGCACCGAAT
GGCATCGTTTAACGATGTATCGTCGTTTGGCTGAAATTGCGGGTGAGTACCTAAAGAAAGGTTCGCAGATTTATGTTGAA
GGTAAATTGCAAACTCGTAAGTGGCAAGACCAACAGGGTCAAGACAGATACACCACAGAAATTATTGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGCGGTGAAGCTGGTGGTCGCGGCGGTGAAGCTGGTGGTGGTAACGGCGGTTACCAACGTCCGC
AAAATAACCAGGGCGGTGGATACCAAAACCAGGGCGGTGGCTATAATCAAGCACCAGCTCAGGGCGGTCAGCAGCAAGGC
GGTTACAACCAAAACCAAGGCGGCGGTTTCAATCAAGCTCCAGCGCAAGGTGGAAATCAGCCTCAGCCGAAGACTCCGCC
AATGGCCGAGCCTGACTTTGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.585

100

0.577
  ssb Vibrio cholerae strain A1552

51.942

100

0.532
  ssb Neisseria meningitidis MC58

46.734

99.005

0.463
  ssb Neisseria gonorrhoeae MS11

45.729

99.005

0.453

Multiple sequence alignment