Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DK877_RS05565 Genome accession   NZ_CP030023
Coordinates   1097507..1098187 (+) Length   226 a.a.
NCBI ID   WP_002935253.1    Uniprot ID   Q83VP0
Organism   Streptococcus suis strain ISU2414     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1092507..1103187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK877_RS05545 (DK877_05725) - 1092643..1092978 (+) 336 WP_225585609.1 dihydrofolate reductase family protein -
  DK877_RS05550 (DK877_05730) - 1093021..1094004 (-) 984 WP_002935259.1 L-lactate dehydrogenase -
  DK877_RS05555 (DK877_05735) gyrA 1094193..1096637 (+) 2445 WP_002935255.1 DNA gyrase subunit A -
  DK877_RS05560 (DK877_05740) - 1096644..1097393 (+) 750 WP_002935254.1 class A sortase -
  DK877_RS05565 (DK877_05745) radC 1097507..1098187 (+) 681 WP_002935253.1 DNA repair protein RadC Machinery gene
  DK877_RS05570 (DK877_05750) - 1098184..1098876 (-) 693 WP_002935252.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DK877_RS05575 (DK877_05755) - 1098880..1099518 (-) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  DK877_RS05580 (DK877_05760) - 1099653..1099856 (-) 204 WP_009909930.1 DUF4649 family protein -
  DK877_RS05585 (DK877_05765) - 1099858..1100202 (-) 345 WP_002935248.1 DUF1831 domain-containing protein -
  DK877_RS05590 (DK877_05770) - 1100204..1101319 (-) 1116 WP_002935247.1 cysteine desulfurase family protein -
  DK877_RS05595 (DK877_05775) - 1101330..1102307 (-) 978 WP_009909926.1 ribose-phosphate diphosphokinase -
  DK877_RS05600 (DK877_05780) - 1102452..1103018 (-) 567 WP_002935243.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25766.97 Da        Isoelectric Point: 7.4771

>NTDB_id=258370 DK877_RS05565 WP_002935253.1 1097507..1098187(+) (radC) [Streptococcus suis strain ISU2414]
MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=258370 DK877_RS05565 WP_002935253.1 1097507..1098187(+) (radC) [Streptococcus suis strain ISU2414]
ATGTATCAAATTGAATTCAAAGAAGAGGCCATTCTACCTAGAGAACGTTTGGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAACTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTGCTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCACCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCACAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(108-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83VP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.333

99.558

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482

Multiple sequence alignment