Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CWB41_RS15095 Genome accession   NZ_CP025086
Coordinates   3119755..3120243 (+) Length   162 a.a.
NCBI ID   WP_115836164.1    Uniprot ID   A0A3D9YZF7
Organism   Methylovirgula ligni strain BW863     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3114755..3125243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWB41_RS15080 (CWB41_15165) dctA 3116620..3117960 (+) 1341 WP_115836167.1 C4-dicarboxylate transporter DctA -
  CWB41_RS15085 (CWB41_15170) - 3117973..3118344 (-) 372 WP_115836166.1 cyclic nucleotide-binding domain-containing protein -
  CWB41_RS15090 (CWB41_15175) - 3118489..3119625 (+) 1137 WP_115836165.1 radical SAM protein -
  CWB41_RS15095 (CWB41_15180) ssb 3119755..3120243 (+) 489 WP_115836164.1 single-stranded DNA-binding protein Machinery gene
  CWB41_RS15100 (CWB41_15185) - 3120280..3121386 (+) 1107 WP_115836163.1 homoserine O-acetyltransferase -
  CWB41_RS15105 (CWB41_15190) gyrA 3121622..3124369 (+) 2748 WP_115836162.1 DNA gyrase subunit A -
  CWB41_RS15110 (CWB41_15195) coaD 3124443..3124946 (+) 504 WP_115836161.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18220.16 Da        Isoelectric Point: 5.8525

>NTDB_id=258353 CWB41_RS15095 WP_115836164.1 3119755..3120243(+) (ssb) [Methylovirgula ligni strain BW863]
MAGSVNKVILIGNLGRDPEVRRLNSGDSVVNFSLATTESWRDKASGERKDRTEWHNIVIFNENLGRIAEQYCKKGSKVYL
EGQLQTREYTDKDGNQRRTTEVVLQRFRGELTLLDSRGSARGESLDDRATPEPSGSFGHSSPMESDKRPSRAAEMIDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=258353 CWB41_RS15095 WP_115836164.1 3119755..3120243(+) (ssb) [Methylovirgula ligni strain BW863]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGATCGGCAACCTGGGTCGCGACCCCGAAGTACGGCGGCTGAATTCGGGCGA
TTCCGTCGTGAACTTCAGCCTCGCGACGACCGAGTCCTGGCGCGACAAGGCGAGCGGCGAGCGCAAGGACCGCACCGAAT
GGCACAATATCGTTATTTTCAACGAGAATTTGGGCCGGATCGCGGAGCAATATTGCAAGAAGGGCTCCAAGGTCTATCTC
GAGGGTCAATTGCAGACGCGCGAATATACCGACAAGGACGGCAATCAGCGCCGTACGACCGAAGTCGTCCTGCAGCGCTT
CCGCGGCGAGCTGACGCTGCTCGACAGCCGTGGCAGCGCACGGGGCGAATCTCTTGACGATCGCGCTACACCCGAACCCA
GCGGCAGCTTCGGCCATTCCTCGCCAATGGAATCCGACAAGCGCCCGAGCCGCGCCGCGGAAATGATCGACGACGACATT
CCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D9YZF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

43.889

100

0.488
  ssb Glaesserella parasuis strain SC1401

40.642

100

0.469
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.469
  ssb Vibrio cholerae strain A1552

43.353

100

0.463

Multiple sequence alignment