Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SER39006_RS04880 Genome accession   NZ_CP025084
Coordinates   1034136..1035269 (+) Length   377 a.a.
NCBI ID   WP_021013322.1    Uniprot ID   A0A2I5T3V8
Organism   Prodigiosinella confusarubida strain ATCC 39006     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1029136..1040269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SER39006_RS04855 (Ser39006_004855) mscL 1029247..1029657 (-) 411 WP_021013327.1 large-conductance mechanosensitive channel protein MscL -
  SER39006_RS04860 (Ser39006_004860) trkA 1029764..1031140 (-) 1377 WP_021013326.1 Trk system potassium transporter TrkA -
  SER39006_RS04865 (Ser39006_004865) rsmB 1031190..1032479 (-) 1290 WP_101377472.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  SER39006_RS04870 (Ser39006_004870) fmt 1032542..1033483 (-) 942 WP_021013324.1 methionyl-tRNA formyltransferase -
  SER39006_RS04875 (Ser39006_004875) def 1033509..1034021 (-) 513 WP_021013323.1 peptide deformylase -
  SER39006_RS04880 (Ser39006_004880) dprA 1034136..1035269 (+) 1134 WP_021013322.1 DNA-protecting protein DprA Machinery gene
  SER39006_RS04885 (Ser39006_004885) - 1035241..1035714 (+) 474 WP_021013321.1 DUF494 family protein -
  SER39006_RS04890 (Ser39006_004890) - 1035742..1036302 (+) 561 WP_021013320.1 type I DNA topoisomerase -
  SER39006_RS04895 (Ser39006_004895) tsaC 1036295..1036864 (+) 570 WP_021013319.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  SER39006_RS04900 (Ser39006_004900) aroE 1036882..1037709 (+) 828 WP_021013318.1 shikimate dehydrogenase -
  SER39006_RS23575 - 1037763..1037890 (+) 128 Protein_941 DUF1488 domain-containing protein -
  SER39006_RS04905 (Ser39006_004905) - 1037940..1038476 (-) 537 WP_021013317.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41138.06 Da        Isoelectric Point: 5.6033

>NTDB_id=258312 SER39006_RS04880 WP_021013322.1 1034136..1035269(+) (dprA) [Prodigiosinella confusarubida strain ATCC 39006]
MTDTEVWLRLASVRGLGAKQTAKLARQLLDSKDYSPDFMLSLGLNATQIEQFLTFDRACLENTLCWLDQPGHDLLTYSDT
NYPPLLNNISSPPVLLFVAGDSHLLALPQIAIVGSRDNSAYGEQWGRYFAQELSLNDLIVTSGLAIGIDGIAHRSALEMG
GKTIAVLGSGLKSIYPHRHRPLAERILEQGGALVSEFALTAPPVPANFPRRNRIISGLSLGVLVVEASRRSGSLVTARYA
LEQNREIFALPGPIGNPMMEGTHWLIQQGAYLVTHPKDILEQLNSSLQWFSGLPNESTGETISIRYDELELPFADVLANV
GDEVTPVDVVAERAGQPVPEVVSKLLDLELAGWIAAVPGGYVRLRRAGHVRRTHVLV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=258312 SER39006_RS04880 WP_021013322.1 1034136..1035269(+) (dprA) [Prodigiosinella confusarubida strain ATCC 39006]
ATGACTGATACGGAAGTTTGGTTACGTCTGGCATCGGTGCGTGGTTTGGGGGCGAAACAGACGGCAAAGTTGGCCCGGCA
GTTACTGGACTCGAAAGATTACTCGCCGGACTTTATGCTCTCCCTTGGATTGAATGCGACACAGATCGAACAATTTTTGA
CGTTTGATCGTGCATGTTTGGAAAACACGTTGTGCTGGTTGGATCAACCTGGACACGATCTTCTCACCTATAGCGATACT
AATTATCCCCCTTTGCTGAACAATATCAGCTCTCCGCCTGTACTACTTTTTGTTGCTGGCGATTCCCATTTACTGGCATT
GCCTCAGATCGCGATCGTGGGTAGTCGTGATAACAGTGCTTATGGTGAACAGTGGGGACGGTACTTTGCTCAGGAACTTA
GCCTGAATGACTTGATTGTTACCAGCGGACTGGCAATAGGAATTGATGGTATTGCACATCGATCAGCGTTGGAGATGGGA
GGGAAAACGATTGCAGTGCTAGGCAGTGGTCTGAAGAGTATTTATCCCCATCGCCATCGGCCTTTGGCAGAACGCATTCT
CGAACAAGGTGGTGCGTTGGTGTCTGAATTTGCATTAACCGCTCCTCCAGTGCCTGCCAATTTTCCACGCCGGAATCGAA
TTATCAGTGGGCTTAGCCTCGGTGTTTTAGTAGTTGAAGCCTCTAGGCGCAGCGGTTCACTAGTAACGGCACGTTATGCG
CTGGAACAAAACAGGGAGATTTTTGCCTTACCGGGCCCGATTGGCAACCCTATGATGGAAGGGACCCATTGGCTGATTCA
GCAAGGTGCGTATTTGGTAACACATCCGAAAGATATTCTGGAACAATTGAACAGTAGTCTACAGTGGTTTTCTGGTCTGC
CCAATGAAAGCACGGGTGAAACTATTTCTATCCGGTATGATGAACTGGAATTGCCATTTGCTGACGTGTTGGCTAACGTA
GGAGATGAGGTTACACCTGTTGACGTTGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAAGTAGTCAGTAAACTATTGGA
TCTGGAGTTAGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTAAGGAGGGCAGGCCATGTTCGACGTACTC
ATGTACTTGTTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-360)

DNA recombination-mediator protein A (DNA_processg_A)

(68-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I5T3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

51.499

97.347

0.501
  dprA Vibrio cholerae strain A1552

46.341

97.878

0.454
  dprA Glaesserella parasuis strain SC1401

44.504

98.939

0.44
  dprA Legionella pneumophila strain ERS1305867

40.642

99.204

0.403
  dprA Haemophilus influenzae Rd KW20

48.951

75.862

0.371

Multiple sequence alignment