Detailed information NTG0258312

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: DK876_RS09950
• Genome accession: NZ_CP030022
• Coordinates: 2049988..2051082 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain ISU2714
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2044988..2056082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK876_RS09925 (DK876_10305)	pgsA	2045507..2046046 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
DK876_RS09930 (DK876_10310)	rodZ	2046056..2046913 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
DK876_RS09935 (DK876_10315)	yfmH	2046995..2048278 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
DK876_RS09940 (DK876_10320)	yfmF	2048275..2049528 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
DK876_RS09945 (DK876_10325)	yaaA	2049602..2049985 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
DK876_RS09950 (DK876_10330)	recF	2049988..2051082 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
DK876_RS09955 (DK876_10335)	guaB	2051354..2052835 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
DK876_RS09960 (DK876_10340)	trpS	2053067..2054092 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
DK876_RS09965 (DK876_10345)	-	2054447..2055319 (+)	873	WP_012775460.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=258312 DK876_RS09950 WP_012028050.1 2049988..2051082(+) (recF) [Streptococcus suis strain ISU2714]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=258312 DK876_RS09950 WP_012028050.1 2049988..2051082(+) (recF) [Streptococcus suis strain ISU2714]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442