Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DK876_RS04980 Genome accession   NZ_CP030022
Coordinates   1020278..1020958 (-) Length   226 a.a.
NCBI ID   WP_012775155.1    Uniprot ID   Q8VUP6
Organism   Streptococcus suis strain ISU2714     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1015278..1025958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK876_RS04945 (DK876_05140) - 1015447..1016013 (+) 567 WP_002935243.1 CYTH domain-containing protein -
  DK876_RS04950 (DK876_05145) - 1016158..1017135 (+) 978 WP_012775438.1 ribose-phosphate diphosphokinase -
  DK876_RS04955 (DK876_05150) - 1017146..1018261 (+) 1116 WP_012028207.1 cysteine desulfurase family protein -
  DK876_RS04960 (DK876_05155) - 1018263..1018607 (+) 345 WP_002935248.1 DUF1831 domain-containing protein -
  DK876_RS04965 (DK876_05160) - 1018609..1018812 (+) 204 WP_012775154.1 DUF4649 family protein -
  DK876_RS04970 (DK876_05165) - 1018947..1019585 (+) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  DK876_RS04975 (DK876_05170) - 1019589..1020281 (+) 693 WP_012028208.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DK876_RS04980 (DK876_05175) radC 1020278..1020958 (-) 681 WP_012775155.1 DNA repair protein RadC Machinery gene
  DK876_RS04985 (DK876_05180) - 1021071..1021820 (-) 750 WP_012028210.1 class A sortase -
  DK876_RS04990 (DK876_05185) gyrA 1021827..1024271 (-) 2445 WP_012027057.1 DNA gyrase subunit A -
  DK876_RS04995 (DK876_05190) - 1024460..1025443 (+) 984 WP_002935259.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25800.99 Da        Isoelectric Point: 7.4771

>NTDB_id=258271 DK876_RS04980 WP_012775155.1 1020278..1020958(-) (radC) [Streptococcus suis strain ISU2714]
MYQIEFKEEAFLPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=258271 DK876_RS04980 WP_012775155.1 1020278..1020958(-) (radC) [Streptococcus suis strain ISU2714]
ATGTATCAAATTGAATTTAAAGAAGAGGCCTTTCTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAACTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(108-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VUP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.044

100

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482