Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   DK875_RS10025 Genome accession   NZ_CP030020
Coordinates   2040115..2040423 (-) Length   102 a.a.
NCBI ID   WP_002936549.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2514     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2035115..2045423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS09995 (DK875_10400) - 2035816..2036367 (-) 552 WP_014636756.1 folate family ECF transporter S component -
  DK875_RS10000 (DK875_10410) - 2036682..2037869 (-) 1188 WP_002936543.1 acetate kinase -
  DK875_RS10005 (DK875_10415) comGH 2037919..2038872 (-) 954 WP_002936545.1 class I SAM-dependent methyltransferase Machinery gene
  DK875_RS10010 (DK875_10420) comGG 2038929..2039339 (-) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  DK875_RS10015 (DK875_10425) comGF/cglF 2039317..2039751 (-) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  DK875_RS10020 (DK875_10430) comGE 2039738..2040031 (-) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  DK875_RS10025 (DK875_10435) comGD/cglD 2040115..2040423 (-) 309 WP_002936549.1 competence type IV pilus minor pilin ComGD Machinery gene
  DK875_RS10030 (DK875_10440) comGC 2040404..2040685 (-) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  DK875_RS10035 (DK875_10445) comGB 2040687..2041559 (-) 873 WP_053866392.1 type II secretion system F family protein Machinery gene
  DK875_RS10040 (DK875_10450) comGA 2041471..2042421 (-) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  DK875_RS10045 (DK875_10455) - 2042507..2043457 (+) 951 WP_002936565.1 S66 peptidase family protein -
  DK875_RS10050 (DK875_10460) - 2043492..2043857 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11523.25 Da        Isoelectric Point: 5.1069

>NTDB_id=258198 DK875_RS10025 WP_002936549.1 2040115..2040423(-) (comGD/cglD) [Streptococcus suis strain ISU2514]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASFHQKVNLAIGGQEVTNGYQ
AVQVPRNIEVLEGKTITLEEDT

Nucleotide


Download         Length: 309 bp        

>NTDB_id=258198 DK875_RS10025 WP_002936549.1 2040115..2040423(-) (comGD/cglD) [Streptococcus suis strain ISU2514]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCTAGTTTCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTACAGGTACCCAGAAATATAGAAGTGTTGGAAGGGAAGACCATTACACTTGAAGAAGATACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae Rx1

46.237

91.176

0.422
  comGD/cglD Streptococcus pneumoniae D39

46.237

91.176

0.422
  comGD/cglD Streptococcus pneumoniae R6

46.237

91.176

0.422
  comGD/cglD Streptococcus pneumoniae TIGR4

46.237

91.176

0.422
  comGD/cglD Streptococcus mitis SK321

45.161

91.176

0.412
  comGD/cglD Streptococcus mitis NCTC 12261

45.161

91.176

0.412
  comGD Streptococcus gordonii str. Challis substr. CH1

42.553

92.157

0.392

Multiple sequence alignment