Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DK875_RS05480 Genome accession   NZ_CP030020
Coordinates   1129568..1130248 (-) Length   226 a.a.
NCBI ID   WP_002935253.1    Uniprot ID   Q83VP0
Organism   Streptococcus suis strain ISU2514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124568..1135248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS05445 (DK875_05700) - 1124737..1125303 (+) 567 WP_002935243.1 CYTH domain-containing protein -
  DK875_RS05450 (DK875_05705) - 1125448..1126425 (+) 978 WP_013730387.1 ribose-phosphate diphosphokinase -
  DK875_RS05455 (DK875_05710) - 1126436..1127551 (+) 1116 WP_002935247.1 cysteine desulfurase family protein -
  DK875_RS05460 (DK875_05715) - 1127553..1127897 (+) 345 WP_002935248.1 DUF1831 domain-containing protein -
  DK875_RS05465 (DK875_05720) - 1127899..1128102 (+) 204 WP_013730388.1 DUF4649 family protein -
  DK875_RS05470 (DK875_05725) - 1128237..1128875 (+) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  DK875_RS05475 (DK875_05730) - 1128879..1129571 (+) 693 WP_002935252.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DK875_RS05480 (DK875_05735) radC 1129568..1130248 (-) 681 WP_002935253.1 DNA repair protein RadC Machinery gene
  DK875_RS05485 (DK875_05740) - 1130362..1131111 (-) 750 WP_002935254.1 class A sortase -
  DK875_RS05490 (DK875_05745) gyrA 1131118..1133562 (-) 2445 WP_002935255.1 DNA gyrase subunit A -
  DK875_RS05495 (DK875_05750) - 1133751..1134734 (+) 984 WP_002935259.1 L-lactate dehydrogenase -
  DK875_RS05500 (DK875_05755) - 1134777..1135112 (-) 336 WP_225585609.1 dihydrofolate reductase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25766.97 Da        Isoelectric Point: 7.4771

>NTDB_id=258164 DK875_RS05480 WP_002935253.1 1129568..1130248(-) (radC) [Streptococcus suis strain ISU2514]
MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=258164 DK875_RS05480 WP_002935253.1 1129568..1130248(-) (radC) [Streptococcus suis strain ISU2514]
ATGTATCAAATTGAATTCAAAGAAGAGGCCATTCTACCTAGAGAACGTTTGGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAACTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTGCTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCACCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCACAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(108-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83VP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.333

99.558

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482