Detailed information NTG0258126

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: DK875_RS00775
• Genome accession: NZ_CP030020
• Coordinates: 124816..125817 (+)
• Length: 333 a.a.
• NCBI ID: WP_002935300.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ISU2514
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 119816..130817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK875_RS00745 (DK875_00760)	-	119869..120447 (+)	579	WP_002935308.1	CPBP family intramembrane glutamic endopeptidase	-
DK875_RS00750 (DK875_00765)	-	120462..120890 (+)	429	WP_053866406.1	Msa family membrane protein	-
DK875_RS00755 (DK875_00770)	-	120883..121755 (+)	873	WP_002935305.1	ABC transporter ATP-binding protein	-
DK875_RS00760 (DK875_00775)	-	121761..122531 (+)	771	WP_002935304.1	membrane protein	-
DK875_RS00765 (DK875_00780)	-	122534..124246 (+)	1713	WP_002935303.1	ABC transporter ATP-binding protein	-
DK875_RS00770	-	124348..124521 (+)	174	WP_002935301.1	hypothetical protein	-
DK875_RS00775 (DK875_00785)	ruvB	124816..125817 (+)	1002	WP_002935300.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
DK875_RS00780 (DK875_00790)	-	125817..126563 (+)	747	WP_002935299.1	GNAT family N-acetyltransferase	-
DK875_RS00785 (DK875_00795)	-	126565..127203 (+)	639	WP_002935298.1	HAD-IA family hydrolase	-
DK875_RS00790 (DK875_00800)	comR	127450..128367 (+)	918	WP_002935296.1	helix-turn-helix domain-containing protein	Regulator
DK875_RS00795 (DK875_00805)	-	128776..129978 (-)	1203	WP_002935295.1	IS110-like element ISSsu7 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37640.15 Da
• Isoelectric Point: 4.4673

>NTDB_id=258126 DK875_RS00775 WP_002935300.1 124816..125817(+) (ruvB) [Streptococcus suis strain ISU2514]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=258126 DK875_RS00775 WP_002935300.1 124816..125817(+) (ruvB) [Streptococcus suis strain ISU2514]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGATAAGGTCAAGGACCAGCTCAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTTTTTGGCCCACCGGGTCTGGGGAAGACCACCATGGCCTTTGTCATTGCCAACGAATTGGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCGGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATTATGATTGGAGCAGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCACCGTTTACCCTGATTGGAGCAACCACT
CGTGCGGGTATGCTATCCAATCCTCTGCGGGCCCGTTTTGGTATTACCGGTCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGAACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGCTTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGAGACGGCCTGATT
GATGATAACATTACGGACAAGGCCCTGACCATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGCCTCAACACTCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAACACCTGGGCTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.368	98.799	0.508
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474