Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A7J09_RS07015 Genome accession   NZ_CP030015
Coordinates   1448318..1448998 (-) Length   226 a.a.
NCBI ID   WP_002935253.1    Uniprot ID   Q83VP0
Organism   Streptococcus suis strain ISU2812     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1443318..1453998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS06980 (A7J09_07120) - 1443488..1444054 (+) 567 WP_029174872.1 CYTH domain-containing protein -
  A7J09_RS06985 (A7J09_07125) - 1444198..1445175 (+) 978 WP_012775438.1 ribose-phosphate diphosphokinase -
  A7J09_RS06990 (A7J09_07130) - 1445186..1446301 (+) 1116 WP_029174871.1 cysteine desulfurase family protein -
  A7J09_RS06995 (A7J09_07135) - 1446303..1446647 (+) 345 WP_002940732.1 DUF1831 domain-containing protein -
  A7J09_RS07000 (A7J09_07140) - 1446649..1446852 (+) 204 WP_029178488.1 DUF4649 family protein -
  A7J09_RS07005 (A7J09_07145) - 1446987..1447625 (+) 639 WP_029174921.1 redox-sensing transcriptional repressor Rex -
  A7J09_RS07010 (A7J09_07150) - 1447629..1448321 (+) 693 WP_024397721.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  A7J09_RS07015 (A7J09_07155) radC 1448318..1448998 (-) 681 WP_002935253.1 RadC family protein Machinery gene
  A7J09_RS07020 (A7J09_07160) - 1449111..1449860 (-) 750 WP_002940809.1 class A sortase -
  A7J09_RS07025 (A7J09_07165) gyrA 1449867..1452311 (-) 2445 WP_029174808.1 DNA gyrase subunit A -
  A7J09_RS07030 (A7J09_07170) - 1452500..1453483 (+) 984 WP_002940816.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25766.97 Da        Isoelectric Point: 7.4771

>NTDB_id=257970 A7J09_RS07015 WP_002935253.1 1448318..1448998(-) (radC) [Streptococcus suis strain ISU2812]
MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=257970 A7J09_RS07015 WP_002935253.1 1448318..1448998(-) (radC) [Streptococcus suis strain ISU2812]
ATGTATCAAATTGAATTTAAAGAAGAGGCCATTCTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAACTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACCC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAACA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(108-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83VP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.333

99.558

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482

Multiple sequence alignment