Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HVPorG_RS11775 Genome accession   NZ_CP025061
Coordinates   2655949..2656488 (-) Length   179 a.a.
NCBI ID   WP_265544819.1    Uniprot ID   -
Organism   Roseomonas mucosa strain HV2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2650949..2661488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVPorG_RS11760 (HVPorG_01784) - 2652010..2652534 (-) 525 WP_027297167.1 peptidylprolyl isomerase -
  HVPorG_RS11765 (HVPorG_01783) coaD 2652595..2653122 (-) 528 WP_019459811.1 pantetheine-phosphate adenylyltransferase -
  HVPorG_RS11770 (HVPorG_01782) gyrA 2653115..2655796 (-) 2682 WP_370688491.1 DNA gyrase subunit A -
  HVPorG_RS11775 (HVPorG_01781) ssb 2655949..2656488 (-) 540 WP_265544819.1 single-stranded DNA-binding protein Machinery gene
  HVPorG_RS11780 (HVPorG_01780) uvrA 2656902..2659904 (+) 3003 WP_265544821.1 excinuclease ABC subunit UvrA -
  HVPorG_RS11785 (HVPorG_01779) - 2659956..2660777 (-) 822 WP_265544822.1 squalene/phytoene synthase family protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18705.46 Da        Isoelectric Point: 7.0237

>NTDB_id=257904 HVPorG_RS11775 WP_265544819.1 2655949..2656488(-) (ssb) [Roseomonas mucosa strain HV2]
MAGSVNKVILVGNLGRDPEVRNFQNGGKVVNLRIATSENYKDREGNRQERTEWHSVAIFNERLGEVAEKYLRKGSTVYIE
GKLETRKWQDKDGQDRYTTEIVLRSFGGELTMIGGRASGGEGGEGGGYSGGGGGGFGGGPRAGGGERGGAPGGRSPSRGG
GGGGGWDAPKGDLDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=257904 HVPorG_RS11775 WP_265544819.1 2655949..2656488(-) (ssb) [Roseomonas mucosa strain HV2]
ATGGCCGGCAGCGTCAACAAGGTGATCCTGGTGGGCAATCTGGGGCGCGACCCCGAGGTCCGCAACTTCCAGAACGGCGG
CAAGGTGGTGAACCTCCGCATCGCCACCAGCGAGAACTACAAGGACCGCGAGGGGAACCGCCAGGAGCGGACCGAGTGGC
ACTCGGTGGCGATCTTCAACGAGCGCCTGGGCGAGGTGGCCGAGAAGTACCTGCGCAAGGGCTCCACGGTCTATATCGAG
GGCAAGCTCGAGACCCGGAAGTGGCAGGACAAGGACGGCCAGGACCGGTACACCACCGAGATCGTGCTGCGGAGCTTCGG
CGGCGAGTTGACCATGATCGGCGGCCGCGCCAGCGGCGGCGAGGGTGGTGAGGGCGGCGGCTATTCCGGCGGCGGCGGTG
GCGGCTTCGGCGGTGGCCCGCGCGCCGGCGGCGGAGAGCGCGGCGGCGCCCCCGGCGGACGCTCGCCCTCGCGCGGCGGC
GGCGGCGGTGGCGGCTGGGATGCGCCGAAGGGCGACCTGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.745

100

0.48
  ssb Vibrio cholerae strain A1552

47.222

100

0.475
  ssb Neisseria gonorrhoeae MS11

43.094

100

0.436
  ssb Neisseria meningitidis MC58

42.077

100

0.43

Multiple sequence alignment