NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	CFC57_RS08500	Genome accession	NZ_CP029751
Coordinates	1707324..1708010 (-)	Length	228 a.a.
NCBI ID	WP_000692876.1	Uniprot ID	-
Organism	Staphylococcus aureus strain Smith
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1702324..1713010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFC57_RS08455 (CFC57_08815)	rpmA	1703038..1703322 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
CFC57_RS08460 (CFC57_08820)	-	1703334..1703654 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
CFC57_RS08465 (CFC57_08825)	rplU	1703660..1703968 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
CFC57_RS08470 (CFC57_08830)	mreD	1704261..1704791 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
CFC57_RS08475 (CFC57_08835)	mreC	1704791..1705633 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
CFC57_RS08480 (CFC57_08840)	-	1705832..1705951 (-)	120	WP_000840603.1	hypothetical protein	-
CFC57_RS08485 (CFC57_08845)	-	1706025..1706498 (-)	474	WP_063651419.1	DUF4930 family protein	-
CFC57_RS08490 (CFC57_08850)	-	1706658..1706855 (+)	198	WP_000025835.1	hypothetical protein	-
CFC57_RS08495 (CFC57_08855)	-	1706972..1707256 (-)	285	WP_000171863.1	hypothetical protein	-
CFC57_RS08500 (CFC57_08860)	ysxA/radC	1707324..1708010 (-)	687	WP_000692876.1	DNA repair protein RadC	Machinery gene
CFC57_RS08505 (CFC57_08865)	-	1708007..1708714 (-)	708	WP_000261112.1	A24 family peptidase	-
CFC57_RS08510 (CFC57_08875)	-	1708977..1710248 (-)	1272	WP_001108340.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
CFC57_RS08515 (CFC57_08880)	-	1710261..1712891 (-)	2631	WP_000425342.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25297.21 Da Isoelectric Point: 6.7572

                                >NTDB_id=257682 CFC57_RS08500 WP_000692876.1 1707324..1708010(-) (ysxA/radC) [Staphylococcus aureus strain Smith]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=257682 CFC57_RS08500 WP_000692876.1 1707324..1708010(-) (ysxA/radC) [Staphylococcus aureus strain Smith]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGCAGAAGAGCCGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGCGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0257682