Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PCRYO_RS10020 Genome accession   NC_007969
Coordinates   2416686..2417345 (-) Length   219 a.a.
NCBI ID   WP_011514278.1    Uniprot ID   -
Organism   Psychrobacter cryohalolentis K5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2411686..2422345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCRYO_RS10005 (Pcryo_1955) - 2413908..2414810 (-) 903 WP_011514275.1 type II secretion system protein N -
  PCRYO_RS10010 (Pcryo_1956) gspN 2414811..2415641 (-) 831 WP_041753212.1 type II secretion system protein N -
  PCRYO_RS10015 (Pcryo_1957) - 2415858..2416181 (-) 324 WP_020444129.1 H-NS family nucleoid-associated regulatory protein -
  PCRYO_RS10020 (Pcryo_1958) ssb 2416686..2417345 (-) 660 WP_011514278.1 single-stranded DNA-binding protein Machinery gene
  PCRYO_RS10025 (Pcryo_1959) - 2417454..2418818 (-) 1365 WP_011514279.1 MFS transporter -
  PCRYO_RS10030 (Pcryo_1960) uvrA 2419404..2422310 (+) 2907 WP_011514280.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23332.00 Da        Isoelectric Point: 5.7762

>NTDB_id=25767 PCRYO_RS10020 WP_011514278.1 2416686..2417345(-) (ssb) [Psychrobacter cryohalolentis K5]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGSTGGSNDAGGGFGSNNQGGQSNQGGYGNQGGGFSNQGGQNDYGQQGGNQP
AQQGGYNQGGSASQGGHQNSFNNQNAPAQQNQFNKPTQAPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 660 bp        

>NTDB_id=25767 PCRYO_RS10020 WP_011514278.1 2416686..2417345(-) (ssb) [Psychrobacter cryohalolentis K5]
ATGCGCGGTGTTAATAAAGTTATCATCATCGGTAACCTCGGTGCAGACCCTGAGGCACGTCAATTCAATAACGGCGGTAG
CGTGACCAATATTTCGGTTGCGACATCAGAGCAGTGGACAGACAAGCAAAGCGGTGAGAAAAGAGAAGCAACGGAATGGC
ATCGCATTTCGTTGTTCAATCGCTTGGGCGAAATCGCTGCGCAGTATCTTCGTAAAGGCAGTAAGGTATATATCGAAGGC
AGCTTACGTACCCGTAAATATCAAGATCCCAACGGACAAGACCGTTATATCACTGAAATTCGTGCTGAACAAATGCAAAT
GCTAGATGGCTCGACAGGTGGTAGTAATGATGCTGGTGGTGGCTTTGGTAGCAATAACCAAGGTGGTCAAAGCAACCAAG
GTGGCTATGGTAATCAGGGCGGCGGATTTAGTAACCAAGGTGGCCAGAACGACTATGGTCAGCAAGGAGGCAATCAGCCC
GCTCAACAAGGCGGTTATAATCAAGGCGGCAGTGCGTCACAGGGTGGTCATCAAAATAGCTTTAATAATCAGAATGCGCC
CGCTCAGCAGAATCAATTTAATAAACCGACTCAAGCACCAGCGCAGTCGAAGCCTACAGCAATGCCAGATGGCCCTGTAG
ACGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.545

100

0.498
  ssb Vibrio cholerae strain A1552

44.196

100

0.452
  ssb Neisseria gonorrhoeae MS11

39.091

100

0.393
  ssb Neisseria meningitidis MC58

39.352

98.63

0.388

Multiple sequence alignment