Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   CWI26_RS09010 Genome accession   NZ_CP025043
Coordinates   1827604..1828248 (+) Length   214 a.a.
NCBI ID   WP_024419424.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1822604..1833248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS08985 (CWI26_08985) - 1823265..1824602 (-) 1338 WP_002942867.1 hemolysin family protein -
  CWI26_RS08990 (CWI26_08990) - 1824735..1825514 (+) 780 WP_100881630.1 ABC transporter ATP-binding protein -
  CWI26_RS08995 (CWI26_08995) - 1825530..1826084 (-) 555 WP_100881631.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  CWI26_RS09000 (CWI26_09000) - 1826094..1826612 (-) 519 WP_024414005.1 TetR/AcrR family transcriptional regulator -
  CWI26_RS09005 (CWI26_09005) - 1826734..1827552 (+) 819 WP_100881632.1 cation diffusion facilitator family transporter -
  CWI26_RS09010 (CWI26_09010) cclA/cilC 1827604..1828248 (+) 645 WP_024419424.1 prepilin peptidase Machinery gene
  CWI26_RS09015 (CWI26_09015) - 1828356..1829816 (+) 1461 WP_014638479.1 nicotinate phosphoribosyltransferase -
  CWI26_RS09020 (CWI26_09020) nadE 1829829..1830653 (+) 825 WP_099806784.1 ammonia-dependent NAD(+) synthetase -
  CWI26_RS09025 (CWI26_09025) trpB 1830695..1831870 (-) 1176 WP_100881633.1 tryptophan synthase subunit beta -
  CWI26_RS09030 (CWI26_09030) tnpA 1832230..1832703 (-) 474 WP_044685873.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24213.36 Da        Isoelectric Point: 8.4760

>NTDB_id=257621 CWI26_RS09010 WP_024419424.1 1827604..1828248(+) (cclA/cilC) [Streptococcus suis strain AH681]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LLVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=257621 CWI26_RS09010 WP_024419424.1 1827604..1828248(+) (cclA/cilC) [Streptococcus suis strain AH681]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTATTGGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCCGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50

99.065

0.495
  cclA/cilC Streptococcus pneumoniae Rx1

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae D39

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae R6

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

47.642

99.065

0.472
  cclA/cilC Streptococcus mitis NCTC 12261

46.226

99.065

0.458

Multiple sequence alignment