Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   CWI26_RS05185 Genome accession   NZ_CP025043
Coordinates   1043885..1045264 (+) Length   459 a.a.
NCBI ID   WP_029187994.1    Uniprot ID   A0A2I5N3K8
Organism   Streptococcus suis strain AH681     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context


Location: 1038885..1050264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS05155 (CWI26_05155) pstA 1039378..1040265 (+) 888 WP_044757644.1 phosphate ABC transporter permease PstA -
  CWI26_RS05160 (CWI26_05160) pstB 1040290..1041093 (+) 804 WP_002940866.1 phosphate ABC transporter ATP-binding protein PstB -
  CWI26_RS05165 (CWI26_05165) pstB 1041105..1041863 (+) 759 WP_002937614.1 phosphate ABC transporter ATP-binding protein PstB -
  CWI26_RS05170 (CWI26_05170) phoU 1041892..1042548 (+) 657 WP_002940865.1 phosphate signaling complex protein PhoU -
  CWI26_RS05175 (CWI26_05175) - 1042698..1043075 (+) 378 WP_100881327.1 hypothetical protein -
  CWI26_RS05180 (CWI26_05180) ciaR 1043221..1043892 (+) 672 WP_002940863.1 response regulator transcription factor Regulator
  CWI26_RS05185 (CWI26_05185) ciaH 1043885..1045264 (+) 1380 WP_029187994.1 sensor histidine kinase Regulator
  CWI26_RS05190 (CWI26_05190) - 1045365..1046594 (+) 1230 WP_029176022.1 transglutaminase domain-containing protein -
  CWI26_RS05195 (CWI26_05195) rpsT 1046822..1047070 (-) 249 WP_012027069.1 30S ribosomal protein S20 -
  CWI26_RS05200 (CWI26_05200) coaA 1047129..1048049 (-) 921 WP_002940857.1 type I pantothenate kinase -
  CWI26_RS05205 (CWI26_05205) - 1048158..1048748 (+) 591 WP_024376492.1 class I SAM-dependent methyltransferase -
  CWI26_RS05210 (CWI26_05210) - 1048745..1050022 (+) 1278 WP_024413752.1 pyrimidine-nucleoside phosphorylase -

Sequence


Protein


Download         Length: 459 a.a.        Molecular weight: 52038.74 Da        Isoelectric Point: 6.5307

>NTDB_id=257607 CWI26_RS05185 WP_029187994.1 1043885..1045264(+) (ciaH) [Streptococcus suis strain AH681]
MPKRFKKLMYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQNSDNTLKRIKEEPVMAVGFAIARTYEPNSVFILQD
SPTSEETTSSSSDSMPVPKEQKNTRDGDQLRLGVNTHVLLYSKSGEMVNPDTFTGLADLPLDKEKLGEIKEAKVESSFGM
SEDYRYVTIELATDELGYYSSYDIKYATILVNVSQIKSSIETYESTVAIVMVSAWLISILASIYLSNLSMRPILISYQKQ
KDFVENASHELRTPLAVLQNRLESLFRHPEATILESSESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFD
EIFANYLMIAEENGKTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDDDGRIQITANIKDKSVYFTVADNGLGISDA
DKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKTLGGKISVRDNQPKGTIFEVGLPK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=257607 CWI26_RS05185 WP_029187994.1 1043885..1045264(+) (ciaH) [Streptococcus suis strain AH681]
ATGCCTAAGCGATTTAAAAAATTAATGTACACGGATAAATTTTCCTTCTTTATCCGTTATTTTGCAGTATTTACCCTGAT
TTTTGGCTTGATGACAGCTATCATTTTTCAATTAATGCGTTCAACTATGTATCAAAATTCAGATAATACCTTGAAACGGA
TTAAGGAAGAACCAGTGATGGCTGTTGGTTTTGCGATCGCAAGAACCTATGAGCCCAACTCTGTCTTTATCCTTCAAGAT
AGCCCAACTAGTGAAGAAACGACGAGCTCTAGCTCAGATAGCATGCCTGTTCCTAAAGAACAAAAAAATACTAGAGATGG
AGATCAGCTGAGATTAGGTGTCAATACTCATGTCTTACTCTATAGTAAAAGTGGAGAAATGGTCAATCCGGATACTTTTA
CTGGTTTGGCCGACCTACCGTTAGATAAGGAAAAATTGGGCGAAATTAAGGAAGCAAAGGTTGAATCAAGCTTCGGTATG
TCTGAAGATTATCGCTATGTGACGATTGAGCTGGCTACAGATGAACTAGGTTATTATTCGTCCTATGATATAAAATATGC
GACAATTTTAGTGAATGTCAGCCAAATAAAATCCTCCATTGAGACCTATGAATCGACAGTTGCTATTGTTATGGTTTCAG
CTTGGCTCATTTCTATCTTAGCCAGTATTTACCTATCGAATCTTAGCATGCGTCCAATTCTAATTAGCTATCAAAAGCAA
AAAGACTTTGTTGAAAATGCTAGTCATGAGTTGCGTACGCCGTTGGCTGTTCTCCAAAATCGCTTGGAGAGCCTGTTTCG
CCATCCCGAAGCGACGATTTTAGAGAGTAGTGAAAGCATCGGATCTAGTTTGGAAGAAGTTCGAAATATGCGATTATTGA
CAACGAACCTACTCAATTTGGCTCGTCGTGATGATGGCTTAAAAGTCGATATGATTGATGTCCAACCCAACTATTTTGAT
GAAATCTTTGCTAATTACCTTATGATTGCTGAAGAAAATGGAAAAACACTAACAGTTAATAATTTGATTCATCAGCCGAT
TCGAACAGACAAGGTCCTGATTAAACAGTTGCTTACCATTTTATTTGACAATGCCATGAAGTATACCGACGATGATGGCA
GAATTCAAATTACAGCTAATATCAAGGATAAATCTGTCTACTTCACAGTTGCCGACAATGGTTTGGGAATCAGCGATGCT
GATAAGAAGAAAATCTTTGATCGCTTTTATCGAGTTGATAAGGCCAGAACGCGTCAAAAAGGTGGTTTCGGTCTAGGATT
ATCGCTGGCTCAGCAAATTATCAAGACACTAGGTGGGAAAATCTCTGTTAGAGATAACCAACCGAAAGGAACTATTTTTG
AGGTAGGATTACCTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2I5N3K8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

50

99.782

0.499

  ciaH Streptococcus pneumoniae D39

50

99.782

0.499

  ciaH Streptococcus pneumoniae R6

50

99.782

0.499

  ciaH Streptococcus pneumoniae TIGR4

50

99.782

0.499

  ciaH Streptococcus mutans UA159

49.67

99.129

0.492


Multiple sequence alignment