Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHAM_RS10585 Genome accession   NC_007964
Coordinates   2317697..2318188 (-) Length   163 a.a.
NCBI ID   WP_011510555.1    Uniprot ID   Q1QLM1
Organism   Nitrobacter hamburgensis X14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2312697..2323188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHAM_RS10585 (Nham_2079) ssb 2317697..2318188 (-) 492 WP_011510555.1 single-stranded DNA-binding protein Machinery gene
  NHAM_RS10590 (Nham_2080) - 2318586..2319341 (+) 756 WP_011510556.1 outer membrane protein -
  NHAM_RS10595 (Nham_2081) uvrA 2319642..2322683 (+) 3042 WP_011510557.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17668.64 Da        Isoelectric Point: 7.9915

>NTDB_id=25754 NHAM_RS10585 WP_011510555.1 2317697..2318188(-) (ssb) [Nitrobacter hamburgensis X14]
MAGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSETWRDKTSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGQLQTRKWTDQSGVEKYSTEVVLQNFNSTLTMLDGRNSGGGGNFGSDDSGGDFGAGSPSGGAPRRTVAAGARRSDMDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=25754 NHAM_RS10585 WP_011510555.1 2317697..2318188(-) (ssb) [Nitrobacter hamburgensis X14]
ATGGCGGGTAGCGTGAACAAGGTCATTCTGATCGGCAATCTCGGCGCCGATCCCGAAATCAAGCGGACCCAGGACGGCCG
GCCGATCGCTAATCTGCGGATCGCCACCTCTGAAACCTGGCGCGACAAGACCAGCGGCGAGCGCAAGGAGAAAACCGAGT
GGCACCGCGTCGTGATTTTCAACGAAGGTTTGTGCAAGGTCGCCGAGCAGTATCTGAAGAAAGGTGCGAAGGTCTACATC
GAGGGTCAGTTGCAGACCCGCAAATGGACCGACCAGAGCGGCGTCGAAAAATACTCCACCGAAGTCGTGCTGCAGAATTT
CAATTCGACGCTGACGATGCTCGATGGCCGTAACAGCGGCGGCGGCGGCAATTTCGGATCGGATGACTCCGGCGGCGATT
TCGGGGCCGGAAGCCCGTCCGGCGGTGCGCCGCGCCGTACCGTTGCGGCCGGTGCCCGCCGCAGCGATATGGACGACGAC
ATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1QLM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.867

100

0.54
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.521
  ssb Neisseria meningitidis MC58

39.106

100

0.429
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.429

Multiple sequence alignment