Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CWQ22_RS08320 | Genome accession | NZ_CP025027 |
| Coordinates | 1582134..1582625 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain SGEHI2015-107 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1577134..1587625
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWQ22_RS08305 (CWQ22_08305) | - | 1580040..1580711 (-) | 672 | WP_000174846.1 | DUF1129 family protein | - |
| CWQ22_RS08310 (CWQ22_08310) | - | 1580736..1581680 (-) | 945 | WP_000812121.1 | magnesium transporter CorA family protein | - |
| CWQ22_RS08315 (CWQ22_08315) | rpsR | 1581850..1582089 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| CWQ22_RS08320 (CWQ22_08320) | ssbA | 1582134..1582625 (-) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
| CWQ22_RS08325 (CWQ22_08325) | rpsF | 1582637..1582924 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| CWQ22_RS08330 (CWQ22_08330) | mutY | 1583988..1585142 (+) | 1155 | WP_000566235.1 | A/G-specific adenine glycosylase | - |
| CWQ22_RS08335 (CWQ22_08335) | - | 1585319..1585912 (+) | 594 | WP_000402394.1 | helix-turn-helix transcriptional regulator | - |
| CWQ22_RS08340 (CWQ22_08340) | trxA | 1585958..1586290 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| CWQ22_RS08345 (CWQ22_08345) | - | 1586353..1586853 (-) | 501 | WP_000446812.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=257350 CWQ22_RS08320 WP_000609585.1 1582134..1582625(-) (ssbA) [Streptococcus agalactiae strain SGEHI2015-107]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=257350 CWQ22_RS08320 WP_000609585.1 1582134..1582625(-) (ssbA) [Streptococcus agalactiae strain SGEHI2015-107]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |