Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SDEN_RS17210 Genome accession   NC_007954
Coordinates   3944411..3945106 (-) Length   231 a.a.
NCBI ID   WP_011497733.1    Uniprot ID   Q12IY7
Organism   Shewanella denitrificans OS217     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3939411..3950106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEN_RS17190 (Sden_3308) ppiC 3940047..3940325 (+) 279 WP_011497729.1 peptidylprolyl isomerase PpiC -
  SDEN_RS20710 (Sden_3309) - 3940765..3941046 (-) 282 WP_011497730.1 hypothetical protein -
  SDEN_RS20715 (Sden_3310) - 3941176..3941700 (-) 525 WP_332248845.1 DUF3644 domain-containing protein -
  SDEN_RS17200 (Sden_3311) - 3942093..3943136 (-) 1044 WP_011494663.1 IS110-like element ISSde11 family transposase -
  SDEN_RS17205 (Sden_3312) - 3943196..3943588 (-) 393 WP_011497732.1 hypothetical protein -
  SDEN_RS17210 (Sden_3313) ssb 3944411..3945106 (-) 696 WP_011497733.1 single-stranded DNA-binding protein Machinery gene
  SDEN_RS17215 (Sden_3314) - 3945195..3946562 (-) 1368 WP_011497734.1 MFS transporter -
  SDEN_RS17220 (Sden_3315) uvrA 3946820..3949756 (+) 2937 WP_011497735.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25195.59 Da        Isoelectric Point: 5.9284

>NTDB_id=25719 SDEN_RS17210 WP_011497733.1 3944411..3945106(-) (ssb) [Shewanella denitrificans OS217]
MASRGVNKVIIVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEIVVDQSGSMQMLGSRNQNQGPSQAGSQGSQEGGYSAPAQNQYAAPAPAPQAQRPVATPNQ
QYNAPQQAAGAYKQPQQAPQQPSYAPKPQQAPQQGGGYQQAAPAQRPAPQAQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 696 bp        

>NTDB_id=25719 SDEN_RS17210 WP_011497733.1 3944411..3945106(-) (ssb) [Shewanella denitrificans OS217]
ATGGCCAGTCGCGGTGTTAATAAAGTCATTATTGTAGGCAATTTAGGCCAAGATCCAGAAGTACGCTACATGCCTAATGG
CAATGCTGTTGCCAATATTACAGTGGCGACCAGCGAGTCATGGAAAGATCAACAAGGCCAGCAACAAGAGCGTACCGAAT
GGCACCGTGTGGTCATGTTCGGTAAGTTGGCTGAAATCACTGGTGAATACCTACGTAAAGGTTCGCAAGTGTATTTAGAA
GGCAAATTGCAGACACGTAAGTGGAAAGATCAAAGCGGTCAAGACAAGTACACCACCGAAATCGTTGTCGATCAAAGCGG
TAGCATGCAGATGCTAGGTAGCCGTAACCAAAATCAGGGACCAAGCCAAGCGGGCTCACAAGGTTCACAAGAGGGTGGCT
ATAGCGCCCCAGCACAGAACCAGTATGCCGCTCCAGCTCCTGCACCACAGGCTCAGCGCCCAGTTGCAACACCAAATCAA
CAATACAATGCGCCGCAGCAGGCTGCGGGTGCTTATAAACAGCCACAGCAAGCACCGCAGCAGCCTAGCTATGCGCCTAA
GCCTCAGCAGGCACCACAGCAAGGCGGTGGTTATCAGCAAGCCGCTCCTGCTCAGCGCCCAGCGCCGCAAGCACAGCCGC
AGCAAAACTTCACTCCAGATTTGGACGACGGTTGGGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q12IY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.282

100

0.519
  ssb Glaesserella parasuis strain SC1401

47.807

98.701

0.472
  ssb Neisseria gonorrhoeae MS11

42.544

98.701

0.42
  ssb Neisseria meningitidis MC58

41.667

98.701

0.411

Multiple sequence alignment