Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | CWD84_RS09420 | Genome accession | NZ_CP025001 |
| Coordinates | 1732102..1733172 (+) | Length | 356 a.a. |
| NCBI ID | WP_045926720.1 | Uniprot ID | A0AAI8HN13 |
| Organism | Bacillus siamensis strain SCSIO 05746 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1727102..1738172
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWD84_RS09390 (CWD84_09390) | - | 1727573..1727818 (-) | 246 | WP_003153078.1 | DUF2626 domain-containing protein | - |
| CWD84_RS09395 (CWD84_09395) | - | 1728055..1728435 (+) | 381 | WP_060964760.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| CWD84_RS09405 (CWD84_09405) | - | 1728644..1729474 (+) | 831 | WP_060964761.1 | STAS domain-containing protein | - |
| CWD84_RS09410 (CWD84_09410) | - | 1729512..1730813 (-) | 1302 | WP_060964762.1 | hemolysin family protein | - |
| CWD84_RS09415 (CWD84_09415) | - | 1730959..1731909 (+) | 951 | WP_060964763.1 | magnesium transporter CorA family protein | - |
| CWD84_RS09420 (CWD84_09420) | comGA | 1732102..1733172 (+) | 1071 | WP_045926720.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CWD84_RS09425 (CWD84_09425) | comGB | 1733159..1734196 (+) | 1038 | WP_060964764.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CWD84_RS09430 (CWD84_09430) | comGC | 1734201..1734509 (+) | 309 | WP_016938966.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CWD84_RS09435 (CWD84_09435) | comGD | 1734499..1734936 (+) | 438 | WP_060964765.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CWD84_RS09440 (CWD84_09440) | comGE | 1734920..1735234 (+) | 315 | WP_060964766.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| CWD84_RS09445 (CWD84_09445) | comGF | 1735146..1735643 (+) | 498 | WP_235588382.1 | competence type IV pilus minor pilin ComGF | - |
| CWD84_RS09450 (CWD84_09450) | comGG | 1735644..1736021 (+) | 378 | WP_060964768.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| CWD84_RS09455 (CWD84_09455) | - | 1736078..1736257 (+) | 180 | WP_022552966.1 | YqzE family protein | - |
| CWD84_RS09460 (CWD84_09460) | - | 1736298..1736627 (-) | 330 | WP_016938972.1 | DUF3889 domain-containing protein | - |
| CWD84_RS09465 (CWD84_09465) | tapA | 1736886..1737557 (+) | 672 | WP_060964769.1 | amyloid fiber anchoring/assembly protein TapA | - |
| CWD84_RS09470 (CWD84_09470) | sipW | 1737529..1738113 (+) | 585 | WP_060964770.1 | signal peptidase I SipW | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 40409.64 Da Isoelectric Point: 9.2036
>NTDB_id=257081 CWD84_RS09420 WP_045926720.1 1732102..1733172(+) (comGA) [Bacillus siamensis strain SCSIO 05746]
MENIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPSETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFPGAGAALLSFLKHSHGLILFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKAENCSVYCRLYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD
MENIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPSETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFPGAGAALLSFLKHSHGLILFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKAENCSVYCRLYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD
Nucleotide
Download Length: 1071 bp
>NTDB_id=257081 CWD84_RS09420 WP_045926720.1 1732102..1733172(+) (comGA) [Bacillus siamensis strain SCSIO 05746]
ATGGAGAATATTGAAACATACAGCAGGAACATTATAAACGAGGCCTATACGGCAAGAGCTTCAGATATACACATTGTGCC
GCGTGAAAGGGATGCTTTCATTCATTTTCGCATTGGTCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCGATGGATATAGGAGAAAGACGAAAGCCGCAAAACGGATCATTGTCT
CTGCCGCTTCCATCCGAAACCGTTCATTTAAGGATGTCAACCTTACCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCCGGGGGCAGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCCCACGGCCTGATTCTTTTTACCGGTCCGACCGGATCTGGAAAAACGACCACTCTCTATTCGCTTGTCAATTAT
GCAAAACGTCATTTCAACCGGCGGATTGTCACGCTTGAAGATCCCGTAGAAACGAGAGATGAAGATGTTTTACAAGTTCA
AGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGACCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATTGCAGTCCGCGCGGCTATGACGGGGCACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCTATATACAGGCTGCTGGAGTTTGGGGTGAACATGACGGAAATTGAACAAACCGTTATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACGTGTCCGTTTTGCAAAGCGGAAAACTGCTCCGTGTACTGCCGGCTTTACA
GGCAGACGCGCCGTGCGGGAATCTATGAACTGCTTTACGGGAAAAATCTCACCCAATGCTTTCAGGAAGCAAAAGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCCGAAAAGGAATCGCGCTCGGCTATGTCACGACTGACAACTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA
ATGGAGAATATTGAAACATACAGCAGGAACATTATAAACGAGGCCTATACGGCAAGAGCTTCAGATATACACATTGTGCC
GCGTGAAAGGGATGCTTTCATTCATTTTCGCATTGGTCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCGATGGATATAGGAGAAAGACGAAAGCCGCAAAACGGATCATTGTCT
CTGCCGCTTCCATCCGAAACCGTTCATTTAAGGATGTCAACCTTACCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCCGGGGGCAGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCCCACGGCCTGATTCTTTTTACCGGTCCGACCGGATCTGGAAAAACGACCACTCTCTATTCGCTTGTCAATTAT
GCAAAACGTCATTTCAACCGGCGGATTGTCACGCTTGAAGATCCCGTAGAAACGAGAGATGAAGATGTTTTACAAGTTCA
AGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGACCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATTGCAGTCCGCGCGGCTATGACGGGGCACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCTATATACAGGCTGCTGGAGTTTGGGGTGAACATGACGGAAATTGAACAAACCGTTATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACGTGTCCGTTTTGCAAAGCGGAAAACTGCTCCGTGTACTGCCGGCTTTACA
GGCAGACGCGCCGTGCGGGAATCTATGAACTGCTTTACGGGAAAAATCTCACCCAATGCTTTCAGGAAGCAAAAGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCCGAAAAGGAATCGCGCTCGGCTATGTCACGACTGACAACTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
82.303 |
100 |
0.823 |
| pilB | Glaesserella parasuis strain SC1401 |
38.793 |
97.753 |
0.379 |