Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CVO91_RS03980 Genome accession   NZ_CP024974
Coordinates   749368..750309 (+) Length   313 a.a.
NCBI ID   WP_004299002.1    Uniprot ID   A0AA87F6Y4
Organism   Streptococcus suis strain CZ130302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 744368..755309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS03970 (CVO91_03970) - 746345..747094 (+) 750 WP_004298997.1 hypothetical protein -
  CVO91_RS03975 (CVO91_03975) metG 747300..749303 (+) 2004 WP_004298998.1 methionine--tRNA ligase -
  CVO91_RS03980 (CVO91_03980) coiA 749368..750309 (+) 942 WP_004299002.1 competence protein CoiA family protein Machinery gene
  CVO91_RS03985 (CVO91_03985) pepF 750538..752340 (+) 1803 WP_004299006.1 oligoendopeptidase F Regulator
  CVO91_RS03990 (CVO91_03990) - 752342..752785 (+) 444 WP_004299010.1 hypothetical protein -
  CVO91_RS03995 (CVO91_03995) - 752796..753344 (+) 549 WP_004299013.1 DUF6630 family protein -
  CVO91_RS04000 (CVO91_04000) - 753419..754138 (+) 720 WP_050571942.1 O-methyltransferase -
  CVO91_RS04005 (CVO91_04005) prsA 754198..755196 (+) 999 WP_004299019.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36137.77 Da        Isoelectric Point: 7.8698

>NTDB_id=256926 CVO91_RS03980 WP_004299002.1 749368..750309(+) (coiA) [Streptococcus suis strain CZ130302]
MLVALDEDGQVFNVLENPAPQGSFSCPGCGGPVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEADLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKAFPFGQGNLLDILRLPFAKQALSYFTCSVDQDLLDYVAKQLYYRVPKWM
SLQAEAYQQGKNLLSQSLDDFYPQIRLPRSAIGFAQIKQDLTPIYQAFDLFYDKAEDKRKQILYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=256926 CVO91_RS03980 WP_004299002.1 749368..750309(+) (coiA) [Streptococcus suis strain CZ130302]
ATGTTAGTAGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTTCCTGTCC
AGGTTGTGGAGGACCGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCATGTCACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCACCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCTAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGATCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTTTCTTTTAGTATGAATATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACCAAGGCCTTTCCCTTTGGTCAAGGGAATTTACTAGATATTTTACGGCTTCCCTTTGCTAAGCAAGCCTTGT
CCTATTTTACTTGTTCGGTTGATCAGGATTTGCTGGACTATGTTGCCAAGCAACTCTATTACCGAGTACCCAAGTGGATG
AGCTTGCAGGCGGAGGCCTACCAGCAAGGGAAAAACTTGCTCAGTCAGTCCTTGGATGACTTCTATCCCCAAATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATCAAACAAGACCTGACACCGATTTACCAAGCATTTGATCTGTTTTACGACA
AAGCAGAAGATAAGAGAAAACAAATCTTGTATCCACCTATCATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.603

99.681

0.514
  coiA Streptococcus pneumoniae TIGR4

50.641

99.681

0.505
  coiA Streptococcus pneumoniae Rx1

50.641

99.681

0.505
  coiA Streptococcus pneumoniae D39

50.641

99.681

0.505
  coiA Streptococcus pneumoniae R6

50.641

99.681

0.505
  coiA Lactococcus lactis subsp. cremoris KW2

39.815

100

0.412

Multiple sequence alignment