Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BPRO_RS22835 Genome accession   NC_007948
Coordinates   4831124..4831612 (-) Length   162 a.a.
NCBI ID   WP_011485437.1    Uniprot ID   Q122U3
Organism   Polaromonas sp. JS666     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4831750..4832617 4831124..4831612 flank 138


Gene organization within MGE regions


Location: 4831124..4832617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPRO_RS22835 (Bpro_4565) ssb 4831124..4831612 (-) 489 WP_011485437.1 single-stranded DNA-binding protein Machinery gene
  BPRO_RS28775 (Bpro_4566) - 4831750..4832617 (+) 868 WP_086003100.1 IS5 family transposase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17589.64 Da        Isoelectric Point: 5.9555

>NTDB_id=25686 BPRO_RS22835 WP_011485437.1 4831124..4831612(-) (ssb) [Polaromonas sp. JS666]
MASVNKVIIVGNLGRDPEMRSFPSGDQVANVTIATTDKWKDKQSGEMKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDKDGQEKYTTEIRADQMQMLGSRQGMGGPGGDDGGGYEAPARPAARAPAAAPRQAPAPTKAASGFDDMDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=25686 BPRO_RS22835 WP_011485437.1 4831124..4831612(-) (ssb) [Polaromonas sp. JS666]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGGCGCGACCCCGAAATGCGCAGCTTTCCCAGCGGCGACCA
GGTGGCCAACGTCACCATCGCCACCACCGACAAGTGGAAGGACAAGCAGTCCGGCGAAATGAAAGAGGCCACCGAATGGC
ACCGCGTGGTGTTCAACGGCCGCCTTGCCGAAATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTACGTCGAGGGT
TCGCTGCGCACGCGCAAATGGACCGACAAGGACGGCCAGGAAAAGTACACCACCGAAATCCGTGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGTATGGGCGGCCCCGGGGGCGACGATGGCGGCGGCTATGAGGCGCCGGCCCGTCCCGCTGCTC
GGGCACCCGCTGCCGCGCCGCGGCAGGCTCCCGCGCCGACCAAGGCGGCCAGCGGCTTCGACGACATGGATGACGACATT
CCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q122U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.381

100

0.574
  ssb Vibrio cholerae strain A1552

50.562

100

0.556
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.5
  ssb Neisseria meningitidis MC58

45.455

100

0.494

Multiple sequence alignment