Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CV098_RS08420 Genome accession   NZ_CP024958
Coordinates   1775560..1776549 (-) Length   329 a.a.
NCBI ID   WP_017864886.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1770560..1781549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV098_RS08405 (CV098_08405) - 1771926..1772852 (-) 927 WP_017864884.1 peptidyl-prolyl cis-trans isomerase -
  CV098_RS08410 (CV098_08410) - 1773006..1773689 (-) 684 WP_010906108.1 O-methyltransferase -
  CV098_RS08415 (CV098_08415) pepF 1773692..1775497 (-) 1806 WP_026138936.1 oligoendopeptidase F Regulator
  CV098_RS08420 (CV098_08420) coiA 1775560..1776549 (-) 990 WP_017864886.1 competence protein CoiA Machinery gene
  CV098_RS08425 (CV098_08425) - 1776623..1777708 (-) 1086 WP_017864887.1 YdcF family protein -
  CV098_RS08430 (CV098_08430) - 1777870..1778718 (-) 849 WP_017864888.1 alpha/beta hydrolase -
  CV098_RS08435 (CV098_08435) - 1778910..1780331 (-) 1422 WP_012898314.1 NCS2 family permease -
  CV098_RS08440 (CV098_08440) - 1780638..1781474 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39411.06 Da        Isoelectric Point: 8.9160

>NTDB_id=256815 CV098_RS08420 WP_017864886.1 1775560..1776549(-) (coiA) [Lactococcus lactis subsp. lactis strain G423]
MLTAIDENGQVVNLLEIEAKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSEKR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=256815 CV098_RS08420 WP_017864886.1 1775560..1776549(-) (coiA) [Lactococcus lactis subsp. lactis strain G423]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGCAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAAAAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TTTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.847

99.088

0.742
  coiA Streptococcus mitis NCTC 12261

43.478

97.872

0.426
  coiA Streptococcus pneumoniae TIGR4

43.168

97.872

0.422
  coiA Streptococcus pneumoniae Rx1

43.168

97.872

0.422
  coiA Streptococcus pneumoniae D39

43.168

97.872

0.422
  coiA Streptococcus pneumoniae R6

43.168

97.872

0.422

Multiple sequence alignment