Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   CSC58_RS03900 Genome accession   NZ_CP029681
Coordinates   688562..689248 (+) Length   228 a.a.
NCBI ID   WP_000692886.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0473     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 683562..694248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC58_RS03880 (CSC58_0711) - 683680..686310 (+) 2631 WP_000425353.1 valine--tRNA ligase -
  CSC58_RS03885 (CSC58_0712) - 686323..687594 (+) 1272 WP_001108346.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  CSC58_RS03895 (CSC58_0713) - 687858..688565 (+) 708 WP_001792860.1 A24 family peptidase -
  CSC58_RS03900 (CSC58_0714) ysxA/radC 688562..689248 (+) 687 WP_000692886.1 DNA repair protein RadC Machinery gene
  CSC58_RS03905 (CSC58_0715) - 689316..689600 (+) 285 WP_000171859.1 hypothetical protein -
  CSC58_RS03910 - 689717..689914 (-) 198 WP_000025835.1 hypothetical protein -
  CSC58_RS03915 (CSC58_0716) - 690074..690547 (+) 474 WP_001236734.1 DUF4930 family protein -
  CSC58_RS03920 - 690621..690740 (+) 120 WP_000840602.1 hypothetical protein -
  CSC58_RS03925 (CSC58_0717) mreC 690940..691782 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  CSC58_RS03930 (CSC58_0718) mreD 691782..692312 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  CSC58_RS03935 (CSC58_0719) rplU 692674..692982 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  CSC58_RS03940 (CSC58_0720) - 692988..693308 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  CSC58_RS03945 (CSC58_0721) rpmA 693320..693604 (+) 285 WP_000916187.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25311.24 Da        Isoelectric Point: 6.7572

>NTDB_id=256798 CSC58_RS03900 WP_000692886.1 688562..689248(+) (ysxA/radC) [Staphylococcus aureus strain AR_0473]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=256798 CSC58_RS03900 WP_000692886.1 688562..689248(+) (ysxA/radC) [Staphylococcus aureus strain AR_0473]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGCTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCAGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377

Multiple sequence alignment