Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MFLA_RS12805 Genome accession   NC_007947
Coordinates   2690659..2692149 (-) Length   496 a.a.
NCBI ID   WP_011480728.1    Uniprot ID   Q1GYB2
Organism   Methylobacillus flagellatus KT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2685659..2697149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFLA_RS12800 (Mfla_2509) metH 2686712..2690500 (-) 3789 WP_011480727.1 methionine synthase -
  MFLA_RS12805 (Mfla_2510) comM 2690659..2692149 (-) 1491 WP_011480728.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MFLA_RS12810 (Mfla_2511) - 2692152..2692394 (-) 243 WP_011480729.1 accessory factor UbiK family protein -
  MFLA_RS12815 (Mfla_2512) - 2692647..2693438 (+) 792 WP_011480730.1 TorF family putative porin -
  MFLA_RS12820 (Mfla_2513) glnK 2693502..2693840 (+) 339 WP_011480731.1 P-II family nitrogen regulator -
  MFLA_RS12825 (Mfla_2514) - 2693851..2695236 (+) 1386 WP_011480732.1 ammonium transporter -
  MFLA_RS12835 (Mfla_2516) gshA 2695839..2697131 (+) 1293 WP_048812000.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52924.84 Da        Isoelectric Point: 7.7990

>NTDB_id=25668 MFLA_RS12805 WP_011480728.1 2690659..2692149(-) (comM) [Methylobacillus flagellatus KT]
MALAVLHSRALAGMEAPAVAVEVHLANGLPSFTIVGLPEAEVKESKDRVRAALQTAQFEFPARRITVNLAPADLPKESGR
YDLPIALGILAASGQIPLQGLDQYEVAGELALTGELRPIRGALAMAYKAKESGRTFILPQDSAAEAALVQGVAVLPATSL
LQVCAHLTGRELLAPQVVSVVQHASAEGDFAEVKGQLQARRALEVAAAGGHSVLMSGPPGTGKSMLASRFVGILPAMTEV
EALESAAIQSLSKGFRASDWGKRPYRAPHHTASGVALVGGGAIPKPGEISLAHHGVLFLDELAEFDRKVLEVLREPLESG
HITVSRAARQAEFPARFQLVAAMNPCPCGYLGHPNGKCRCTPDQIARYRHRLSGPLLDRIDLHIQVPALTEEELMQAPAG
EASTTIRSRVEAARRRQLDRQGVANYLLTSQQVETYCQPDEAGAALLKQAIARLDLSARAYHRILKVARTIADLSASEAV
QSVHIAEAVQYRRLGL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=25668 MFLA_RS12805 WP_011480728.1 2690659..2692149(-) (comM) [Methylobacillus flagellatus KT]
ATGGCGCTGGCGGTGTTACATAGCCGCGCGCTGGCCGGAATGGAGGCGCCAGCGGTCGCGGTGGAGGTTCATCTTGCCAA
CGGCTTGCCGAGTTTTACCATTGTGGGCCTGCCTGAAGCAGAGGTGAAAGAGAGCAAGGACAGGGTGCGGGCTGCTCTGC
AGACGGCCCAATTCGAATTTCCGGCTCGCCGGATTACCGTCAACCTGGCGCCTGCAGACTTGCCTAAGGAAAGTGGTCGT
TATGATCTGCCTATTGCATTGGGCATTCTGGCTGCTTCCGGACAGATTCCTCTTCAGGGGCTGGATCAGTATGAGGTGGC
AGGCGAGCTGGCGTTGACCGGCGAGTTGCGGCCGATTCGGGGAGCCTTGGCCATGGCATACAAGGCCAAGGAATCTGGCC
GTACCTTCATTCTGCCCCAGGACAGTGCTGCCGAGGCGGCCTTGGTGCAAGGCGTAGCAGTCCTGCCAGCCACCAGTTTG
TTGCAAGTGTGCGCGCATTTGACAGGTCGTGAGCTACTGGCGCCGCAAGTGGTCAGTGTTGTCCAGCACGCTTCCGCTGA
GGGCGATTTTGCCGAGGTCAAGGGTCAGTTACAAGCCAGGCGCGCCCTGGAGGTCGCCGCTGCGGGTGGTCATAGTGTAC
TGATGTCCGGCCCGCCTGGCACAGGCAAATCTATGCTGGCCTCGCGCTTTGTTGGCATATTGCCTGCGATGACGGAGGTG
GAAGCGCTGGAGTCTGCGGCTATCCAGTCTCTGAGCAAGGGTTTCCGCGCCAGCGATTGGGGCAAGCGGCCCTATCGCGC
GCCTCACCACACGGCTTCGGGCGTGGCCCTGGTGGGTGGGGGTGCGATTCCCAAGCCGGGTGAGATTTCGCTTGCGCATC
ATGGTGTTTTGTTCCTGGACGAGCTTGCGGAGTTCGACCGCAAGGTGCTGGAAGTGTTGCGTGAACCCCTGGAGTCCGGG
CACATCACTGTCTCACGCGCAGCGCGCCAGGCGGAGTTTCCCGCCCGCTTTCAGCTGGTTGCCGCCATGAACCCATGTCC
ATGCGGCTATCTTGGGCATCCTAACGGCAAGTGCCGGTGCACGCCGGACCAGATCGCGCGCTACCGCCACCGATTGTCTG
GGCCGTTGCTGGACCGCATTGATCTTCACATCCAGGTGCCGGCATTGACTGAGGAGGAGTTGATGCAGGCGCCGGCAGGC
GAGGCGAGTACCACAATCAGGAGCCGGGTCGAGGCGGCAAGGCGTCGCCAGCTGGATCGTCAGGGCGTCGCCAATTATTT
GCTGACCAGCCAGCAGGTGGAAACATACTGCCAGCCAGACGAAGCAGGGGCTGCCTTGCTGAAACAGGCGATTGCACGCC
TCGACCTGTCTGCACGTGCATATCACCGTATCCTCAAGGTGGCACGCACCATTGCGGACCTGTCTGCCAGTGAAGCCGTG
CAAAGTGTTCATATTGCCGAAGCGGTGCAATACCGCAGGCTGGGGTTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1GYB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.798

0.544
  comM Haemophilus influenzae Rd KW20

52.695

100

0.532
  comM Vibrio campbellii strain DS40M4

52.929

99.798

0.528
  comM Glaesserella parasuis strain SC1401

51.992

100

0.526
  comM Legionella pneumophila str. Paris

51.497

100

0.52
  comM Legionella pneumophila strain ERS1305867

51.497

100

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.733

100

0.476

Multiple sequence alignment